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Applied Optics

Applied Optics


  • Editor: Joseph N. Mait
  • Vol. 52, Iss. 34 — Dec. 1, 2013
  • pp: 8270–8279

Three-dimensional photoacoustic tomography based on graphics-processing-unit-accelerated finite element method

Kuan Peng, Ling He, Ziqiang Zhu, Jingtian Tang, and Jiaying Xiao  »View Author Affiliations

Applied Optics, Vol. 52, Issue 34, pp. 8270-8279 (2013)

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Compared with commonly used analytical reconstruction methods, the frequency-domain finite element method (FEM) based approach has proven to be an accurate and flexible algorithm for photoacoustic tomography. However, the FEM-based algorithm is computationally demanding, especially for three-dimensional cases. To enhance the algorithm’s efficiency, in this work a parallel computational strategy is implemented in the framework of the FEM-based reconstruction algorithm using a graphic-processing-unit parallel frame named the “compute unified device architecture.” A series of simulation experiments is carried out to test the accuracy and accelerating effect of the improved method. The results obtained indicate that the parallel calculation does not change the accuracy of the reconstruction algorithm, while its computational cost is significantly reduced by a factor of 38.9 with a GTX 580 graphics card using the improved method.

© 2013 Optical Society of America

OCIS Codes
(110.6960) Imaging systems : Tomography
(170.3010) Medical optics and biotechnology : Image reconstruction techniques
(170.5120) Medical optics and biotechnology : Photoacoustic imaging
(200.4960) Optics in computing : Parallel processing

ToC Category:
Imaging Systems

Original Manuscript: September 16, 2013
Manuscript Accepted: October 20, 2013
Published: November 25, 2013

Virtual Issues
Vol. 9, Iss. 2 Virtual Journal for Biomedical Optics

Kuan Peng, Ling He, Ziqiang Zhu, Jingtian Tang, and Jiaying Xiao, "Three-dimensional photoacoustic tomography based on graphics-processing-unit-accelerated finite element method," Appl. Opt. 52, 8270-8279 (2013)

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