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Singular value decomposition based regularization prior to spectral mixing improves crosstalk in dynamic imaging using spectral diffuse optical tomographyYuxuan Zhan, Adam T. Eggebrecht, Joseph P. Culver, and Hamid Dehghani »View Author Affiliations
Yuxuan Zhan,1
Adam T. Eggebrecht,2
Joseph P. Culver,2
and Hamid Dehghani1,*
1School of Computer Science, University of Birmingham, Birmingham, B15 2TT, UK 2Department of Radiology, Washington University School of Medicine, 4525 Scott Avenue, St Louis, MO, 63110, USA *Corresponding author: h.dehghani@cs.bham.ac.uk |
Biomedical Optics Express, Vol. 3, Issue 9, pp. 2036-2049 (2012)
http://dx.doi.org/10.1364/BOE.3.002036
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Abstract
The spectrally constrained diffuse optical tomography (DOT) method relies on incorporating spectral prior information directly into the image reconstruction algorithm, thereby correlating the underlying optical properties across multiple wavelengths. Although this method has been shown to provide a solution that is stable, the use of conventional Tikhonov-type regularization techniques can lead to additional crosstalk between parameters, particularly in linear, single-step dynamic imaging applications. This is due mainly to the suboptimal regularization of the spectral Jacobian matrix, which smoothes not only the image-data space, but also the spectral mapping space. In this work a novel regularization technique based on the singular value decomposition (SVD) is presented that preserves the spectral prior information while regularizing the Jacobian matrix, leading to dramatically reduced crosstalk between the recovered parameters. Using simulated data, images of changes in oxygenated and deoxygenated hemoglobin concentrations are reconstructed via the SVD-based approach and compared with images reconstructed by using non-spectral and conventional spectral methods. In a 2D, two wavelength example, it is shown that the proposed approach provides a 98% reduction in crosstalk between recovered parameters as compared with conventional spectral reconstruction algorithms, and 60% as compared with non-spectrally constrained algorithms. Using a subject specific multilayered model of the human head, a noiseless dynamic simulation of cortical activation is performed to further demonstrate such improvement in crosstalk. However, with the addition of realistic noise in the data, both non-spectral and proposed algorithms perform similarly, indicating that the use of spectrally constrained reconstruction algorithms in dynamic DOT may be limited by the contrast of the signal as well as the noise characteristics of the system.
© 2012 OSA
OCIS Codes
(110.6960) Imaging systems : Tomography
(170.3010) Medical optics and biotechnology : Image reconstruction techniques
(170.3660) Medical optics and biotechnology : Light propagation in tissues
(170.2655) Medical optics and biotechnology : Functional monitoring and imaging
ToC Category:
Image Reconstruction and Inverse Problems
History
Original Manuscript: June 18, 2012
Revised Manuscript: August 2, 2012
Manuscript Accepted: August 4, 2012
Published: August 9, 2012
Virtual Issues
BIOMED 2012
(2012) Biomedical Optics Express
Citation
Yuxuan Zhan, Adam T. Eggebrecht, Joseph P. Culver, and Hamid Dehghani, "Singular value decomposition based regularization prior to spectral mixing improves crosstalk in dynamic imaging using spectral diffuse optical tomography," Biomed. Opt. Express 3, 2036-2049 (2012)
http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-3-9-2036
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- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
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- B. R. White and J. P. Culver, “Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging,” Neuroimage49(1), 568–577 (2010). [CrossRef] [PubMed]
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- J. P. Culver, V. Ntziachristos, M. J. Holboke, and A. G. Yodh, “Optimization of optode arrangements for diffuse optical tomography: A singular-value analysis,” Opt. Lett.26(10), 701–703 (2001). [CrossRef] [PubMed]
- A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage49(1), 561–567 (2010). [CrossRef] [PubMed]
- D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage23(Suppl 1), S275–S288 (2004). [CrossRef] [PubMed]
- A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage49(1), 561–567 (2010). [CrossRef] [PubMed]
- H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng.25(6), 711–732 (2009). [CrossRef] [PubMed]
- Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front Neuroenergetics4, 6 (2012). [CrossRef] [PubMed]
- A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage61(4), 1120–1128 (2012). [CrossRef] [PubMed]
- H. Dehghani, S. Srinivasan, B. W. Pogue, and A. Gibson, “Numerical modelling and image reconstruction in diffuse optical tomography,” Philos. Transact. A Math. Phys. Eng. Sci.367(1900), 3073–3093 (2009). [CrossRef] [PubMed]
- H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt.48(10), D137–D143 (2009). [CrossRef] [PubMed]
- H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng.25(6), 711–732 (2009). [CrossRef] [PubMed]
- M. E. Eames and H. Dehghani, “Wavelength dependence of sensitivity in spectral diffuse optical imaging: effect of normalization on image reconstruction,” Opt. Express16(22), 17780–17791 (2008). [CrossRef] [PubMed]
- B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A.104(29), 12169–12174 (2007). [CrossRef] [PubMed]
- P. K. Yalavarthy, H. Dehghani, B. W. Pogue, and K. D. Paulsen, “Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis,” Opt. Express14(13), 6113–6127 (2006). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W. A. Wells, S. P. Poplack, and K. D. Paulsen, “Near-infrared characterization of breast tumors in vivo using spectrally-constrained reconstruction,” Technol. Cancer Res. Treat.4(5), 513–526 (2005). [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, and K. D. Paulsen, “Spectrally constrained chromophore and scattering near-infrared tomography provides quantitative and robust reconstruction,” Appl. Opt.44(10), 1858–1869 (2005). [CrossRef] [PubMed]
- B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani, B. W. Pogue, K. D. Paulsen, J. Weaver, C. Kogel, and S. P. Poplack, “Spectral priors improve near-infrared diffuse tomography more than spatial priors,” Opt. Lett.30(15), 1968–1970 (2005). [CrossRef] [PubMed]
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- B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani, B. W. Pogue, K. D. Paulsen, J. Weaver, C. Kogel, and S. P. Poplack, “Spectral priors improve near-infrared diffuse tomography more than spatial priors,” Opt. Lett.30(15), 1968–1970 (2005). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W. A. Wells, S. P. Poplack, and K. D. Paulsen, “Near-infrared characterization of breast tumors in vivo using spectrally-constrained reconstruction,” Technol. Cancer Res. Treat.4(5), 513–526 (2005). [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- Q. Fang, J. Selb, S. A. Carp, G. Boverman, E. L. Miller, D. H. Brooks, R. H. Moore, D. B. Kopans, and D. A. Boas, “Combined optical and X-ray tomosynthesis breast imaging,” Radiology258(1), 89–97 (2011). [CrossRef] [PubMed]
- Q. Zhu, S. H. Kurtzma, P. Hegde, S. Tannenbaum, M. Kane, M. Huang, N. G. Chen, B. Jagjivan, and K. Zarfos, “Utilizing optical tomography with ultrasound localization to image heterogeneous hemoglobin distribution in large breast cancers,” Neoplasia7(3), 263–270 (2005). [CrossRef] [PubMed]
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- Q. Fang, J. Selb, S. A. Carp, G. Boverman, E. L. Miller, D. H. Brooks, R. H. Moore, D. B. Kopans, and D. A. Boas, “Combined optical and X-ray tomosynthesis breast imaging,” Radiology258(1), 89–97 (2011). [CrossRef] [PubMed]
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- P. K. Yalavarthy, H. Dehghani, B. W. Pogue, and K. D. Paulsen, “Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis,” Opt. Express14(13), 6113–6127 (2006). [CrossRef] [PubMed]
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- H. Dehghani, B. W. Pogue, S. P. Poplack, and K. D. Paulsen, “Multiwavelength three-dimensional near-infrared tomography of the breast: initial simulation, phantom, and clinical results,” Appl. Opt.42(1), 135–145 (2003). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani, B. W. Pogue, K. D. Paulsen, J. Weaver, C. Kogel, and S. P. Poplack, “Spectral priors improve near-infrared diffuse tomography more than spatial priors,” Opt. Lett.30(15), 1968–1970 (2005). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W. A. Wells, S. P. Poplack, and K. D. Paulsen, “Near-infrared characterization of breast tumors in vivo using spectrally-constrained reconstruction,” Technol. Cancer Res. Treat.4(5), 513–526 (2005). [PubMed]
- H. Dehghani, B. W. Pogue, S. P. Poplack, and K. D. Paulsen, “Multiwavelength three-dimensional near-infrared tomography of the breast: initial simulation, phantom, and clinical results,” Appl. Opt.42(1), 135–145 (2003). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
- G. Zacharakis, H. Kambara, H. Shih, J. Ripoll, J. Grimm, Y. Saeki, R. Weissleder, and V. Ntziachristos, “Volumetric tomography of fluorescent proteins through small animals in vivo,” Proc. Natl. Acad. Sci. U.S.A.102(51), 18252–18257 (2005). [CrossRef] [PubMed]
- G. Zacharakis, H. Kambara, H. Shih, J. Ripoll, J. Grimm, Y. Saeki, R. Weissleder, and V. Ntziachristos, “Volumetric tomography of fluorescent proteins through small animals in vivo,” Proc. Natl. Acad. Sci. U.S.A.102(51), 18252–18257 (2005). [CrossRef] [PubMed]
- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
- B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A.104(29), 12169–12174 (2007). [CrossRef] [PubMed]
- S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics2, 12 (2010). [PubMed]
- A. P. Gibson, T. Austin, N. L. Everdell, M. Schweiger, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three-dimensional whole-head optical tomography of passive motor evoked responses in the neonate,” Neuroimage30(2), 521–528 (2006). [CrossRef] [PubMed]
- A. Corlu, T. Durduran, R. Choe, M. Schweiger, E. M. Hillman, S. R. Arridge, and A. G. Yodh, “Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography,” Opt. Lett.28(23), 2339–2341 (2003). [CrossRef] [PubMed]
- Q. Fang, J. Selb, S. A. Carp, G. Boverman, E. L. Miller, D. H. Brooks, R. H. Moore, D. B. Kopans, and D. A. Boas, “Combined optical and X-ray tomosynthesis breast imaging,” Radiology258(1), 89–97 (2011). [CrossRef] [PubMed]
- G. Zacharakis, H. Kambara, H. Shih, J. Ripoll, J. Grimm, Y. Saeki, R. Weissleder, and V. Ntziachristos, “Volumetric tomography of fluorescent proteins through small animals in vivo,” Proc. Natl. Acad. Sci. U.S.A.102(51), 18252–18257 (2005). [CrossRef] [PubMed]
- A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage61(4), 1120–1128 (2012). [CrossRef] [PubMed]
- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- H. Xu, R. Springett, H. Dehghani, B. W. Pogue, K. D. Paulsen, and J. F. Dunn, “Magnetic-resonance-imaging-coupled broadband near-infrared tomography system for small animal brain studies,” Appl. Opt.44(11), 2177–2188 (2005). [CrossRef] [PubMed]
- H. Xu, H. Dehghani, B. W. Pogue, R. Springett, K. D. Paulsen, and J. F. Dunn, “Near-infrared imaging in the small animal brain: optimization of fiber positions,” J. Biomed. Opt.8(1), 102–110 (2003). [CrossRef] [PubMed]
- H. Dehghani, S. Srinivasan, B. W. Pogue, and A. Gibson, “Numerical modelling and image reconstruction in diffuse optical tomography,” Philos. Transact. A Math. Phys. Eng. Sci.367(1900), 3073–3093 (2009). [CrossRef] [PubMed]
- H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng.25(6), 711–732 (2009). [CrossRef] [PubMed]
- B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani, B. W. Pogue, K. D. Paulsen, J. Weaver, C. Kogel, and S. P. Poplack, “Spectral priors improve near-infrared diffuse tomography more than spatial priors,” Opt. Lett.30(15), 1968–1970 (2005). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, and K. D. Paulsen, “Spectrally constrained chromophore and scattering near-infrared tomography provides quantitative and robust reconstruction,” Appl. Opt.44(10), 1858–1869 (2005). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W. A. Wells, S. P. Poplack, and K. D. Paulsen, “Near-infrared characterization of breast tumors in vivo using spectrally-constrained reconstruction,” Technol. Cancer Res. Treat.4(5), 513–526 (2005). [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics2, 12 (2010). [PubMed]
- Q. Zhu, S. H. Kurtzma, P. Hegde, S. Tannenbaum, M. Kane, M. Huang, N. G. Chen, B. Jagjivan, and K. Zarfos, “Utilizing optical tomography with ultrasound localization to image heterogeneous hemoglobin distribution in large breast cancers,” Neoplasia7(3), 263–270 (2005). [CrossRef] [PubMed]
- H. Niu, S. Khadka, F. Tian, Z. J. Lin, C. Lu, C. Zhu, and H. Liu, “Resting-state functional connectivity assessed with two diffuse optical tomographic systems,” J. Biomed. Opt.16(4), 046006 (2011). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, and K. D. Paulsen, “Interpreting hemoglobin and water concentration, oxygen saturation, and scattering measured in vivo by near-infrared breast tomography,” Proc. Natl. Acad. Sci. U.S.A.100(21), 12349–12354 (2003). [CrossRef] [PubMed]
- A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage49(1), 561–567 (2010). [CrossRef] [PubMed]
- S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics2, 12 (2010). [PubMed]
- H. Obrig and A. Villringer, “Beyond the visible--imaging the human brain with light,” J. Cereb. Blood Flow Metab.23(1), 1–18 (2003). [CrossRef] [PubMed]
- G. Zacharakis, H. Kambara, H. Shih, J. Ripoll, J. Grimm, Y. Saeki, R. Weissleder, and V. Ntziachristos, “Volumetric tomography of fluorescent proteins through small animals in vivo,” Proc. Natl. Acad. Sci. U.S.A.102(51), 18252–18257 (2005). [CrossRef] [PubMed]
- A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage49(1), 561–567 (2010). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W. A. Wells, S. P. Poplack, and K. D. Paulsen, “Near-infrared characterization of breast tumors in vivo using spectrally-constrained reconstruction,” Technol. Cancer Res. Treat.4(5), 513–526 (2005). [PubMed]
- A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage61(4), 1120–1128 (2012). [CrossRef] [PubMed]
- B. R. White and J. P. Culver, “Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging,” Neuroimage49(1), 568–577 (2010). [CrossRef] [PubMed]
- B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt.15(2), 026006 (2010). [CrossRef] [PubMed]
- H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt.48(10), D137–D143 (2009). [CrossRef] [PubMed]
- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
- B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A.104(29), 12169–12174 (2007). [CrossRef] [PubMed]
- A. P. Gibson, T. Austin, N. L. Everdell, M. Schweiger, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three-dimensional whole-head optical tomography of passive motor evoked responses in the neonate,” Neuroimage30(2), 521–528 (2006). [CrossRef] [PubMed]
- H. Xu, R. Springett, H. Dehghani, B. W. Pogue, K. D. Paulsen, and J. F. Dunn, “Magnetic-resonance-imaging-coupled broadband near-infrared tomography system for small animal brain studies,” Appl. Opt.44(11), 2177–2188 (2005). [CrossRef] [PubMed]
- H. Xu, H. Dehghani, B. W. Pogue, R. Springett, K. D. Paulsen, and J. F. Dunn, “Near-infrared imaging in the small animal brain: optimization of fiber positions,” J. Biomed. Opt.8(1), 102–110 (2003). [CrossRef] [PubMed]
- H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng.25(6), 711–732 (2009). [CrossRef] [PubMed]
- P. K. Yalavarthy, H. Dehghani, B. W. Pogue, and K. D. Paulsen, “Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis,” Opt. Express14(13), 6113–6127 (2006). [CrossRef] [PubMed]
- A. Corlu, T. Durduran, R. Choe, M. Schweiger, E. M. Hillman, S. R. Arridge, and A. G. Yodh, “Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography,” Opt. Lett.28(23), 2339–2341 (2003). [CrossRef] [PubMed]
- J. P. Culver, V. Ntziachristos, M. J. Holboke, and A. G. Yodh, “Optimization of optode arrangements for diffuse optical tomography: A singular-value analysis,” Opt. Lett.26(10), 701–703 (2001). [CrossRef] [PubMed]
- G. Zacharakis, H. Kambara, H. Shih, J. Ripoll, J. Grimm, Y. Saeki, R. Weissleder, and V. Ntziachristos, “Volumetric tomography of fluorescent proteins through small animals in vivo,” Proc. Natl. Acad. Sci. U.S.A.102(51), 18252–18257 (2005). [CrossRef] [PubMed]
- Q. Zhu, S. H. Kurtzma, P. Hegde, S. Tannenbaum, M. Kane, M. Huang, N. G. Chen, B. Jagjivan, and K. Zarfos, “Utilizing optical tomography with ultrasound localization to image heterogeneous hemoglobin distribution in large breast cancers,” Neoplasia7(3), 263–270 (2005). [CrossRef] [PubMed]
- H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt.48(10), D137–D143 (2009). [CrossRef] [PubMed]
- B. W. Zeff, B. R. White, H. Dehghani, B. L. Schlaggar, and J. P. Culver, “Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography,” Proc. Natl. Acad. Sci. U.S.A.104(29), 12169–12174 (2007). [CrossRef] [PubMed]
- A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage61(4), 1120–1128 (2012). [CrossRef] [PubMed]
- Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front Neuroenergetics4, 6 (2012). [CrossRef] [PubMed]
- H. Niu, S. Khadka, F. Tian, Z. J. Lin, C. Lu, C. Zhu, and H. Liu, “Resting-state functional connectivity assessed with two diffuse optical tomographic systems,” J. Biomed. Opt.16(4), 046006 (2011). [CrossRef] [PubMed]
- Q. Zhu, S. H. Kurtzma, P. Hegde, S. Tannenbaum, M. Kane, M. Huang, N. G. Chen, B. Jagjivan, and K. Zarfos, “Utilizing optical tomography with ultrasound localization to image heterogeneous hemoglobin distribution in large breast cancers,” Neoplasia7(3), 263–270 (2005). [CrossRef] [PubMed]
Appl. Opt.
- H. Dehghani, B. W. Pogue, S. P. Poplack, and K. D. Paulsen, “Multiwavelength three-dimensional near-infrared tomography of the breast: initial simulation, phantom, and clinical results,” Appl. Opt.42(1), 135–145 (2003). [CrossRef] [PubMed]
- H. Dehghani, B. W. Pogue, J. Shudong, B. Brooksby, and K. D. Paulsen, “Three-dimensional optical tomography: resolution in small-object imaging,” Appl. Opt.42(16), 3117–3128 (2003). [CrossRef] [PubMed]
- H. Xu, R. Springett, H. Dehghani, B. W. Pogue, K. D. Paulsen, and J. F. Dunn, “Magnetic-resonance-imaging-coupled broadband near-infrared tomography system for small animal brain studies,” Appl. Opt.44(11), 2177–2188 (2005). [CrossRef] [PubMed]
- S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, and K. D. Paulsen, “Spectrally constrained chromophore and scattering near-infrared tomography provides quantitative and robust reconstruction,” Appl. Opt.44(10), 1858–1869 (2005). [CrossRef] [PubMed]
- A. Li, G. Boverman, Y. Zhang, D. Brooks, E. L. Miller, M. E. Kilmer, Q. Zhang, E. M. Hillman, and D. A. Boas, “Optimal linear inverse solution with multiple priors in diffuse optical tomography,” Appl. Opt.44(10), 1948–1956 (2005). [CrossRef] [PubMed]
- H. Dehghani, B. R. White, B. W. Zeff, A. Tizzard, and J. P. Culver, “Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography,” Appl. Opt.48(10), D137–D143 (2009). [CrossRef] [PubMed]
Biomed. Opt. Express
- R. C. Mesquita, M. A. Franceschini, and D. A. Boas, “Resting state functional connectivity of the whole head with near-infrared spectroscopy,” Biomed. Opt. Express1(1), 324–336 (2010). [CrossRef] [PubMed]
- B. Khan, P. Chand, and G. Alexandrakis, “Spatiotemporal relations of primary sensorimotor and secondary motor activation patterns mapped by NIR imaging,” Biomed. Opt. Express2(12), 3367–3386 (2011). [CrossRef] [PubMed]
Commun. Numer. Methods Eng.
- H. Dehghani, M. E. Eames, P. K. Yalavarthy, S. C. Davis, S. Srinivasan, C. M. Carpenter, B. W. Pogue, and K. D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Commun. Numer. Methods Eng.25(6), 711–732 (2009). [CrossRef] [PubMed]
Front Neuroenergetics
- Y. Zhan, A. T. Eggebrecht, J. P. Culver, and H. Dehghani, “Image quality analysis of high-density diffuse optical tomography incorporating a subject-specific head model,” Front Neuroenergetics4, 6 (2012). [CrossRef] [PubMed]
- S. P. Koch, C. Habermehl, J. Mehnert, C. H. Schmitz, S. Holtze, A. Villringer, J. Steinbrink, and H. Obrig, “High-resolution optical functional mapping of the human somatosensory cortex,” Front Neuroenergetics2, 12 (2010). [PubMed]
Inverse Probl.
- S. R. Arridge, “Optical tomography in medical imaging,” Inverse Probl.15(2), R41–R93 (1999). [CrossRef]
J. Biomed. Opt.
- H. Niu, S. Khadka, F. Tian, Z. J. Lin, C. Lu, C. Zhu, and H. Liu, “Resting-state functional connectivity assessed with two diffuse optical tomographic systems,” J. Biomed. Opt.16(4), 046006 (2011). [CrossRef] [PubMed]
- H. Xu, H. Dehghani, B. W. Pogue, R. Springett, K. D. Paulsen, and J. F. Dunn, “Near-infrared imaging in the small animal brain: optimization of fiber positions,” J. Biomed. Opt.8(1), 102–110 (2003). [CrossRef] [PubMed]
- B. R. White and J. P. Culver, “Quantitative evaluation of high-density diffuse optical tomography: in vivo resolution and mapping performance,” J. Biomed. Opt.15(2), 026006 (2010). [CrossRef] [PubMed]
J. Cereb. Blood Flow Metab.
- H. Obrig and A. Villringer, “Beyond the visible--imaging the human brain with light,” J. Cereb. Blood Flow Metab.23(1), 1–18 (2003). [CrossRef] [PubMed]
Neoplasia
- Q. Zhu, S. H. Kurtzma, P. Hegde, S. Tannenbaum, M. Kane, M. Huang, N. G. Chen, B. Jagjivan, and K. Zarfos, “Utilizing optical tomography with ultrasound localization to image heterogeneous hemoglobin distribution in large breast cancers,” Neoplasia7(3), 263–270 (2005). [CrossRef] [PubMed]
Neuroimage
- A. P. Gibson, T. Austin, N. L. Everdell, M. Schweiger, S. R. Arridge, J. H. Meek, J. S. Wyatt, D. T. Delpy, and J. C. Hebden, “Three-dimensional whole-head optical tomography of passive motor evoked responses in the neonate,” Neuroimage30(2), 521–528 (2006). [CrossRef] [PubMed]
- B. R. White and J. P. Culver, “Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging,” Neuroimage49(1), 568–577 (2010). [CrossRef] [PubMed]
- B. R. White, A. Z. Snyder, A. L. Cohen, S. E. Petersen, M. E. Raichle, B. L. Schlaggar, and J. P. Culver, “Resting-state functional connectivity in the human brain revealed with diffuse optical tomography,” Neuroimage47(1), 148–156 (2009). [CrossRef] [PubMed]
- A. Custo, D. A. Boas, D. Tsuzuki, I. Dan, R. Mesquita, B. Fischl, W. E. Grimson, and W. Wells, “Anatomical atlas-guided diffuse optical tomography of brain activation,” Neuroimage49(1), 561–567 (2010). [CrossRef] [PubMed]
- A. T. Eggebrecht, B. R. White, S. L. Ferradal, C. Chen, Y. Zhan, A. Z. Snyder, H. Dehghani, and J. P. Culver, “A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping,” Neuroimage61(4), 1120–1128 (2012). [CrossRef] [PubMed]
- D. A. Boas, A. M. Dale, and M. A. Franceschini, “Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy,” Neuroimage23(Suppl 1), S275–S288 (2004). [CrossRef] [PubMed]
Opt. Express
- M. E. Eames and H. Dehghani, “Wavelength dependence of sensitivity in spectral diffuse optical imaging: effect of normalization on image reconstruction,” Opt. Express16(22), 17780–17791 (2008). [CrossRef] [PubMed]
- P. K. Yalavarthy, H. Dehghani, B. W. Pogue, and K. D. Paulsen, “Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis,” Opt. Express14(13), 6113–6127 (2006). [CrossRef] [PubMed]
- A. Bluestone, G. Abdoulaev, C. Schmitz, R. Barbour, and A. Hielscher, “Three-dimensional optical tomography of hemodynamics in the human head,” Opt. Express9(6), 272–286 (2001). [CrossRef] [PubMed]
Opt. Lett.
- D. A. Boas, K. Chen, D. Grebert, and M. A. Franceschini, “Improving the diffuse optical imaging spatial resolution of the cerebral hemodynamic response to brain activation in humans,” Opt. Lett.29(13), 1506–1508 (2004). [CrossRef] [PubMed]
- J. P. Culver, V. Ntziachristos, M. J. Holboke, and A. G. Yodh, “Optimization of optode arrangements for diffuse optical tomography: A singular-value analysis,” Opt. Lett.26(10), 701–703 (2001). [CrossRef] [PubMed]
- B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani, B. W. Pogue, K. D. Paulsen, J. Weaver, C. Kogel, and S. P. Poplack, “Spectral priors improve near-infrared diffuse tomography more than spatial priors,” Opt. Lett.30(15), 1968–1970 (2005). [CrossRef] [PubMed]
- A. Corlu, T. Durduran, R. Choe, M. Schweiger, E. M. Hillman, S. R. Arridge, and A. G. Yodh, “Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography,” Opt. Lett.28(23), 2339–2341 (2003). [CrossRef] [PubMed]
- J. P. Culver, A. M. Siegel, J. J. Stott, and D. A. Boas, “Volumetric diffuse optical tomography of brain activity,” Opt. Lett.28(21), 2061–2063 (2003). [CrossRef] [PubMed]
Philos. Transact. A Math. Phys. Eng. Sci.
- H. Dehghani, S. Srinivasan, B. W. Pogue, and A. Gibson, “Numerical modelling and image reconstruction in diffuse optical tomography,” Philos. Transact. A Math. Phys. Eng. Sci.367(1900), 3073–3093 (2009). [CrossRef] [PubMed]
Phys. Med. Biol.
- R. J. Gaudette, D. H. Brooks, C. A. DiMarzio, M. E. Kilmer, E. L. Miller, T. Gaudette, and D. A. Boas, “A comparison study of linear reconstruction techniques for diffuse optical tomographic imaging of absorption coefficient,” Phys. Med. Biol.45(4), 1051–1070 (2000). [CrossRef] [PubMed]
- A. P. Gibson, J. C. Hebden, and S. R. Arridge, “Recent advances in diffuse optical imaging,” Phys. Med. Biol.50(4), R1–R43 (2005). [CrossRef] [PubMed]
Proc. Natl. Acad. Sci. U.S.A.
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