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Biomedical Optics Express

Biomedical Optics Express

  • Editor: Joseph A. Izatt
  • Vol. 3, Iss. 9 — Sep. 1, 2012
  • pp: 1993–2003

Biomolecule kinetics measurements in flow cell integrated porous silicon waveguides

Xing Wei, Jeremy W. Mares, Yandong Gao, Deyu Li, and Sharon M. Weiss  »View Author Affiliations


Biomedical Optics Express, Vol. 3, Issue 9, pp. 1993-2003 (2012)
http://dx.doi.org/10.1364/BOE.3.001993


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Abstract

A grating-coupled porous silicon (PSi) waveguide with an integrated polydimethylsiloxane (PDMS) flow cell is demonstrated as a platform for near real-time detection of chemical and biological molecules. This sensor platform not only allows for quantification of molecular binding events, but also provides a means to improve understanding of diffusion and binding mechanisms in constricted nanoscale geometries. Molecular binding events in the waveguide are monitored by angle-resolved reflectance measurements. Diffusion coefficients and adsorption and desorption rate constants of different sized chemical linkers and nucleic acid molecules are determined based on the rate of change of the measured resonance angle. Experimental results show that the diffusion coefficient in PSi is smaller than that in free solutions, and the PSi morphology slows the molecular adsorption rate constant by a factor of 102–104 compared to that of flat surface interactions. Calculations based on simplified mass balance equations and COMSOL simulations give good agreement with experimental data.

© 2012 OSA

OCIS Codes
(050.2770) Diffraction and gratings : Gratings
(130.2790) Integrated optics : Guided waves
(130.6010) Integrated optics : Sensors

ToC Category:
Biosensors and Molecular Diagnostics

History
Original Manuscript: June 13, 2012
Manuscript Accepted: July 23, 2012
Published: July 31, 2012

Citation
Xing Wei, Jeremy W. Mares, Yandong Gao, Deyu Li, and Sharon M. Weiss, "Biomolecule kinetics measurements in flow cell integrated porous silicon waveguides," Biomed. Opt. Express 3, 1993-2003 (2012)
http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-3-9-1993


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