|
|
Bacteria detection with thin wetting film lensless imaging |
Biomedical Optics Express, Vol. 1, Issue 3, pp. 762-770 (2010)
http://dx.doi.org/10.1364/BOE.1.000762
Acrobat PDF (1501 KB)
Abstract
Lensless on-chip imaging is a promising technique to count and monitor cells and micro-objects in liquid sample. In this paper we apply this technique to the observation of µL sample containing bacteria evaporated onto a microscope slide. Compared with previously reported techniques, a large improvement in signal to noise ratio is obtained due to the presence of a few μm thick wetting film creating a micro-lens on top of each bacteria. In these conditions, standard CMOS sensor are able to detect micro-objects as small as few μm, e.g. E.coli and Bacillus subtilis bacteria and 1 μm polymer beads with a large signal to noise ratio of 45 ± 10. An overall detection efficiency of 85 ± 7% and a co-localization error of σ1D = 1.1μm compared with reference fluorescence microscopy images are achieved. This novel technique will be used as a pre-positioning tool prior to other optical identification methods, e.g. Raman spectroscopy.
© 2010 OSA
1. Introduction
C. Kirschner, K. Maquelin, P. Pina, N. A. Ngo Thi, L. P. Choo-Smith, G. D. Sockalingum, C. Sandt, D. Ami, F. Orsini, S. M. Doglia, P. Allouch, M. Mainfait, G. J. Puppels, and D. Naumann, “Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study,” J. Clin. Microbiol. 39(5), 1763–1770 (2001). [CrossRef] [PubMed]
R. Goodacre, E. M. Timmins, R. Burton, N. Kaderbhai, A. M. Woodward, D. B. Kell, and P. J. Rooney, “Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks,” Microbiology 144(5), 1157–1170 (1998). [CrossRef] [PubMed]
M. Harz, M. Kiehntopf, S. Stöckel, P. Rösch, E. Straube, T. Deufel, and J. Popp, “Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy,” J Biophotonics 2(1-2), 70–80 (2009). [CrossRef] [PubMed]
J. Guicheteau, S. Christesen, D. Emge, and A. Tripathi, “Bacterial mixture identification using Raman and surface-enhanced Raman chemical imaging,” J. Raman Spectrosc. (2010), to be published. [CrossRef]
R. Mariella Jr., “Sample preparation: the weak link in microfluidics-based biodetection,” Biomed. Microdevices 10(6), 777–784 (2008). [CrossRef] [PubMed]
2. Thin wetting film lensless imaging system
Setup
T. W. Su, S. Seo, A. Erlinger, and A. Ozcan, “High-throughput lensfree imaging and characterization of a heterogeneous cell solution on a chip,” Biotechnol. Bioeng. 102(3), 856–868 (2009). [CrossRef] [PubMed]
O. Mudanyali, A. Erlinger, S. Seo, T.-W. Su, D. Tseng, and A. Ozcan, “Lensless on-chip imaging of cells provides a new tool for high-throughput cell-biology and medical diagnostics,” J. Vis. Exp. 34, (2009). [PubMed]
Measurements
S. Seo, T. W. Su, D. K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree holographic imaging for on-chip cytometry and diagnostics,” Lab Chip 9(6), 777–787 (2009). [CrossRef] [PubMed]
M.-S. Kim, T. Scharf, and H. P. Herzig, “Small-size microlens characterization by multiwavelength high-resolution interference microscopy,” Opt. Express 18(14 Issue 14), 14319–14329 (2010). [CrossRef] [PubMed]
O. Mudanyali, A. Erlinger, S. Seo, T.-W. Su, D. Tseng, and A. Ozcan, “Lensless on-chip imaging of cells provides a new tool for high-throughput cell-biology and medical diagnostics,” J. Vis. Exp. 34, (2009). [PubMed]
S. Seo, T. W. Su, D. K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree holographic imaging for on-chip cytometry and diagnostics,” Lab Chip 9(6), 777–787 (2009). [CrossRef] [PubMed]
S. Seo, T. W. Su, D. K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree holographic imaging for on-chip cytometry and diagnostics,” Lab Chip 9(6), 777–787 (2009). [CrossRef] [PubMed]
C. Oh, S. O. Isikman, B. Khademhosseinieh, and A. Ozcan, “On-chip differential interference contrast microscopy using lensless digital holography,” Opt. Express 18(5 Issue 5), 4717–4726 (2010). [CrossRef] [PubMed]
M. Harz, M. Kiehntopf, S. Stöckel, P. Rösch, E. Straube, T. Deufel, and J. Popp, “Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy,” J Biophotonics 2(1-2), 70–80 (2009). [CrossRef] [PubMed]
J. Guicheteau, S. Christesen, D. Emge, and A. Tripathi, “Bacterial mixture identification using Raman and surface-enhanced Raman chemical imaging,” J. Raman Spectrosc. (2010), to be published. [CrossRef]
2. Results
3. Conclusion
References and links
C. Kirschner, K. Maquelin, P. Pina, N. A. Ngo Thi, L. P. Choo-Smith, G. D. Sockalingum, C. Sandt, D. Ami, F. Orsini, S. M. Doglia, P. Allouch, M. Mainfait, G. J. Puppels, and D. Naumann, “Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study,” J. Clin. Microbiol. 39(5), 1763–1770 (2001). [CrossRef] [PubMed] | |
R. Goodacre, E. M. Timmins, R. Burton, N. Kaderbhai, A. M. Woodward, D. B. Kell, and P. J. Rooney, “Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks,” Microbiology 144(5), 1157–1170 (1998). [CrossRef] [PubMed] | |
M. Harz, M. Kiehntopf, S. Stöckel, P. Rösch, E. Straube, T. Deufel, and J. Popp, “Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy,” J Biophotonics 2(1-2), 70–80 (2009). [CrossRef] [PubMed] | |
J. Guicheteau, S. Christesen, D. Emge, and A. Tripathi, “Bacterial mixture identification using Raman and surface-enhanced Raman chemical imaging,” J. Raman Spectrosc. (2010), to be published. [CrossRef] | |
R. Mariella Jr., “Sample preparation: the weak link in microfluidics-based biodetection,” Biomed. Microdevices 10(6), 777–784 (2008). [CrossRef] [PubMed] | |
T. W. Su, S. Seo, A. Erlinger, and A. Ozcan, “High-throughput lensfree imaging and characterization of a heterogeneous cell solution on a chip,” Biotechnol. Bioeng. 102(3), 856–868 (2009). [CrossRef] [PubMed] | |
S. Seo, T. W. Su, D. K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree holographic imaging for on-chip cytometry and diagnostics,” Lab Chip 9(6), 777–787 (2009). [CrossRef] [PubMed] | |
O. Mudanyali, A. Erlinger, S. Seo, T.-W. Su, D. Tseng, and A. Ozcan, “Lensless on-chip imaging of cells provides a new tool for high-throughput cell-biology and medical diagnostics,” J. Vis. Exp. 34, (2009). [PubMed] | |
M.-S. Kim, T. Scharf, and H. P. Herzig, “Small-size microlens characterization by multiwavelength high-resolution interference microscopy,” Opt. Express 18(14 Issue 14), 14319–14329 (2010). [CrossRef] [PubMed] | |
C. Oh, S. O. Isikman, B. Khademhosseinieh, and A. Ozcan, “On-chip differential interference contrast microscopy using lensless digital holography,” Opt. Express 18(5 Issue 5), 4717–4726 (2010). [CrossRef] [PubMed] |
OCIS Codes
(110.2970) Imaging systems : Image detection systems
(170.3880) Medical optics and biotechnology : Medical and biological imaging
ToC Category:
Microscopy
History
Original Manuscript: July 20, 2010
Revised Manuscript: August 10, 2010
Manuscript Accepted: August 10, 2010
Published: August 31, 2010
Citation
C. P. Allier, G. Hiernard, V. Poher, and J. M. Dinten, "Bacteria detection with thin wetting film lensless imaging," Biomed. Opt. Express 1, 762-770 (2010)
http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-1-3-762
Sort: Year | Journal | Reset
References
- C. Kirschner, K. Maquelin, P. Pina, N. A. Ngo Thi, L. P. Choo-Smith, G. D. Sockalingum, C. Sandt, D. Ami, F. Orsini, S. M. Doglia, P. Allouch, M. Mainfait, G. J. Puppels, and D. Naumann, “Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study,” J. Clin. Microbiol. 39(5), 1763–1770 (2001). [CrossRef] [PubMed]
- R. Goodacre, E. M. Timmins, R. Burton, N. Kaderbhai, A. M. Woodward, D. B. Kell, and P. J. Rooney, “Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks,” Microbiology 144(5), 1157–1170 (1998). [CrossRef] [PubMed]
- M. Harz, M. Kiehntopf, S. Stöckel, P. Rösch, E. Straube, T. Deufel, and J. Popp, “Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy,” J Biophotonics 2(1-2), 70–80 (2009). [CrossRef] [PubMed]
- J. Guicheteau, S. Christesen, D. Emge, and A. Tripathi, “Bacterial mixture identification using Raman and surface-enhanced Raman chemical imaging,” J. Raman Spectrosc. (2010), to be published. [CrossRef]
- R. Mariella., “Sample preparation: the weak link in microfluidics-based biodetection,” Biomed. Microdevices 10(6), 777–784 (2008). [CrossRef] [PubMed]
- T. W. Su, S. Seo, A. Erlinger, and A. Ozcan, “High-throughput lensfree imaging and characterization of a heterogeneous cell solution on a chip,” Biotechnol. Bioeng. 102(3), 856–868 (2009). [CrossRef] [PubMed]
- S. Seo, T. W. Su, D. K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree holographic imaging for on-chip cytometry and diagnostics,” Lab Chip 9(6), 777–787 (2009). [CrossRef] [PubMed]
- O. Mudanyali, A. Erlinger, S. Seo, T.-W. Su, D. Tseng, and A. Ozcan, “Lensless on-chip imaging of cells provides a new tool for high-throughput cell-biology and medical diagnostics,” J. Vis. Exp. 34, (2009). [PubMed]
- M.-S. Kim, T. Scharf, and H. P. Herzig, “Small-size microlens characterization by multiwavelength high-resolution interference microscopy,” Opt. Express 18(14), 14319–14329 (2010). [CrossRef] [PubMed]
- C. Oh, S. O. Isikman, B. Khademhosseinieh, and A. Ozcan, “On-chip differential interference contrast microscopy using lensless digital holography,” Opt. Express 18(5), 4717–4726 (2010). [CrossRef] [PubMed]
Cited By |
OSA is able to provide readers links to articles that cite this paper by participating in CrossRef's Cited-By Linking service. CrossRef includes content from more than 3000 publishers and societies. In addition to listing OSA journal articles that cite this paper, citing articles from other participating publishers will also be listed.





OSA is a member of 