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Optics Express

Optics Express

  • Editor: C. Martijn de Sterke
  • Vol. 19, Iss. 8 — Apr. 11, 2011
  • pp: 7646–7663

Automated 3D trajectory measuring of large numbers of moving particles

Hai Shan Wu, Qi Zhao, Danping Zou, and Yan Qiu Chen  »View Author Affiliations


Optics Express, Vol. 19, Issue 8, pp. 7646-7663 (2011)
http://dx.doi.org/10.1364/OE.19.007646


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Abstract

Complex dynamics of natural particle systems, such as insect swarms, bird flocks, fish schools, has attracted great attention of scientists for years. Measuring 3D trajectory of each individual in a group is vital for quantitative study of their dynamic properties, yet such empirical data is rare mainly due to the challenges of maintaining the identities of large numbers of individuals with similar visual features and frequent occlusions. We here present an automatic and efficient algorithm to track 3D motion trajectories of large numbers of moving particles using two video cameras. Our method solves this problem by formulating it as three linear assignment problems (LAP). For each video sequence, the first LAP obtains 2D tracks of moving targets and is able to maintain target identities in the presence of occlusions; the second one matches the visually similar targets across two views via a novel technique named maximum epipolar co-motion length (MECL), which is not only able to effectively reduce matching ambiguity but also further diminish the influence of frequent occlusions; the last one links 3D track segments into complete trajectories via computing a globally optimal assignment based on temporal and kinematic cues. Experiment results on simulated particle swarms with various particle densities validated the accuracy and robustness of the proposed method. As real-world case, our method successfully acquired 3D flight paths of fruit fly (Drosophila melanogaster) group comprising hundreds of freely flying individuals.

© 2011 Optical Society of America

OCIS Codes
(110.6880) Imaging systems : Three-dimensional image acquisition
(120.0120) Instrumentation, measurement, and metrology : Instrumentation, measurement, and metrology
(150.6910) Machine vision : Three-dimensional sensing
(100.4999) Image processing : Pattern recognition, target tracking

ToC Category:
Imaging Systems

History
Original Manuscript: November 22, 2010
Revised Manuscript: January 16, 2011
Manuscript Accepted: January 23, 2011
Published: April 6, 2011

Virtual Issues
Vol. 6, Iss. 5 Virtual Journal for Biomedical Optics

Citation
Hai Shan Wu, Qi Zhao, Danping Zou, and Yan Qiu Chen, "Automated 3D trajectory measuring of large numbers of moving particles," Opt. Express 19, 7646-7663 (2011)
http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-19-8-7646


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