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When holography meets coherent diffraction imagingTatiana Latychevskaia, Jean-Nicolas Longchamp, and Hans-Werner Fink »View Author Affiliations
Tatiana Latychevskaia,*
Jean-Nicolas Longchamp,
and Hans-Werner Fink
Institute of Physics, University of Zurich, Winterthurerstrasse 190, CH-8057, Switzerland *Corresponding author: tatiana@physik.uzh.ch |
Optics Express, Vol. 20, Issue 27, pp. 28871-28892 (2012)
http://dx.doi.org/10.1364/OE.20.028871
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Abstract
The phase problem is inherent to crystallographic, astronomical and optical imaging where only the intensity of the scattered signal is detected and the phase information is lost and must somehow be recovered to reconstruct the object’s structure. Modern imaging techniques at the molecular scale rely on utilizing novel coherent light sources like X-ray free electron lasers for the ultimate goal of visualizing such objects as individual biomolecules rather than crystals. Here, unlike in the case of crystals where structures can be solved by model building and phase refinement, the phase distribution of the wave scattered by an individual molecule must directly be recovered. There are two well-known solutions to the phase problem: holography and coherent diffraction imaging (CDI). Both techniques have their pros and cons. In holography, the reconstruction of the scattered complex-valued object wave is directly provided by a well-defined reference wave that must cover the entire detector area which often is an experimental challenge. CDI provides the highest possible, only wavelength limited, resolution, but the phase recovery is an iterative process which requires some pre-defined information about the object and whose outcome is not always uniquely-defined. Moreover, the diffraction patterns must be recorded under oversampling conditions, a pre-requisite to be able to solve the phase problem. Here, we report how holography and CDI can be merged into one superior technique: holographic coherent diffraction imaging (HCDI). An inline hologram can be recorded by employing a modified CDI experimental scheme. We demonstrate that the amplitude of the Fourier transform of an inline hologram is related to the complex-valued visibility, thus providing information on both, the amplitude and the phase of the scattered wave in the plane of the diffraction pattern. With the phase information available, the condition of oversampling the diffraction patterns can be relaxed, and the phase problem can be solved in a fast and unambiguous manner. We demonstrate the reconstruction of various diffraction patterns of objects recorded with visible light as well as with low-energy electrons. Although we have demonstrated our HCDI method using laser light and low-energy electrons, it can also be applied to any other coherent radiation such as X-rays or high-energy electrons.
© 2012 OSA
OCIS Codes
(050.1940) Diffraction and gratings : Diffraction
(090.0090) Holography : Holography
(110.7440) Imaging systems : X-ray imaging
(110.3010) Imaging systems : Image reconstruction techniques
ToC Category:
Imaging Systems
History
Original Manuscript: October 3, 2012
Revised Manuscript: November 29, 2012
Manuscript Accepted: November 29, 2012
Published: December 12, 2012
Virtual Issues
Vol. 8, Iss. 1 Virtual Journal for Biomedical Optics
Citation
Tatiana Latychevskaia, Jean-Nicolas Longchamp, and Hans-Werner Fink, "When holography meets coherent diffraction imaging," Opt. Express 20, 28871-28892 (2012)
http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-20-27-28871
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- M. M. Seibert, T. Ekeberg, F. R. N. C. Maia, M. Svenda, J. Andreasson, O. Jönsson, D. Odić, B. Iwan, A. Rocker, D. Westphal, M. Hantke, D. P. DePonte, A. Barty, J. Schulz, L. Gumprecht, N. Coppola, A. Aquila, M. Liang, T. A. White, A. Martin, C. Caleman, S. Stern, C. Abergel, V. Seltzer, J.-M. Claverie, C. Bostedt, J. D. Bozek, S. Boutet, A. A. Miahnahri, M. Messerschmidt, J. Krzywinski, G. Williams, K. O. Hodgson, M. J. Bogan, C. Y. Hampton, R. G. Sierra, D. Starodub, I. Andersson, S. Bajt, M. Barthelmess, J. C. H. Spence, P. Fromme, U. Weierstall, R. Kirian, M. Hunter, R. B. Doak, S. Marchesini, S. P. Hau-Riege, M. Frank, R. L. Shoeman, L. Lomb, S. W. Epp, R. Hartmann, D. Rolles, A. Rudenko, C. Schmidt, L. Foucar, N. Kimmel, P. Holl, B. Rudek, B. Erk, A. Hömke, C. Reich, D. Pietschner, G. Weidenspointner, L. Strüder, G. Hauser, H. Gorke, J. Ullrich, I. Schlichting, S. Herrmann, G. Schaller, F. Schopper, H. Soltau, K.-U. Kühnel, R. Andritschke, C.-D. Schröter, F. Krasniqi, M. Bott, S. Schorb, D. Rupp, M. Adolph, T. Gorkhover, H. Hirsemann, G. Potdevin, H. Graafsma, B. Nilsson, H. N. Chapman, and J. Hajdu, “Single mimivirus particles intercepted and imaged with an x-ray laser,” Nature470(7332), 78–81 (2011). [CrossRef] [PubMed]
Nature Photon.
- S. Marchesini, S. Boutet, A. E. Sakdinawat, M. J. Bogan, S. Bajt, A. Barty, H. N. Chapman, M. Frank, S. P. Hau-Riege, A. Szoke, C. W. Cui, D. A. Shapiro, M. R. Howells, J. C. H. Spence, J. W. Shaevitz, J. Y. Lee, J. Hajdu, and M. M. Seibert, “Massively parallel x-ray holography,” Nature Photon.2(9), 560–563 (2008). [CrossRef]
New J. Phys.
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Opt. Commun.
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Opt. Express
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- S. Marchesini, H. N. Chapman, S. P. Hau-Riege, R. A. London, A. Szoke, H. He, M. R. Howells, H. Padmore, R. Rosen, J. C. H. Spence, and U. Weierstall, “Coherent x-ray diffractive imaging: applications and limitations,” Opt. Express11(19), 2344–2353 (2003). [CrossRef] [PubMed]
- R. N. Wilke, M. Priebe, M. Bartels, K. Giewekemeyer, A. Diaz, P. Karvinen, and T. Salditt, “Hard x-ray imaging of bacterial cells: nano-diffraction and ptychographic reconstruction,” Opt. Express20(17), 19232–19254 (2012). [CrossRef] [PubMed]
- T. Latychevskaia and H.-W. Fink, “Simultaneous reconstruction of phase and amplitude contrast from a single holographic record,” Opt. Express17(13), 10697–10705 (2009). [CrossRef] [PubMed]
Opt. Lett.
- J. R. Fienup, “Reconstruction of an object from the modulus of its Fourier transform,” Opt. Lett.3(1), 27–29 (1978). [CrossRef] [PubMed]
Optik (Stuttg.)
- R. W. Gerchberg and W. O. Saxton, “A practical algorithm for determination of phase from image and diffraction plane pictures,” Optik (Stuttg.)35, 237–246 (1972).
- R. H. T. Bates, “On phase problems I,” Optik (Stuttg.)51, 161–170 (1978).
- R. H. T. Bates, “Fourier phase problems are uniquely solvable in more than one dimension 1. underlying theory,” Optik (Stuttg.)61, 247–262 (1982).
- A. M. J. Huiser, A. J. J. Drenth, and H. A. Ferwerda, “On phase retrieval in electron-microscopy from image and diffraction pattern,” Optik (Stuttg.)45, 303–316 (1976).
- A. M. J. Huiser and H. A. Ferwerda, “On the problem of phase retrieval in electron microscopy from image and diffraction pattern. 2. Uniqueness and stability,” Optik (Stuttg.)46, 407–420 (1976).
- R. H. T. Bates, “On phase problems II,” Optik (Stuttg.)51, 223–234 (1978).
Phys. Rev. A
- D. J. Vine, G. J. Williams, B. Abbey, M. A. Pfeifer, J. N. Clark, M. D. de Jonge, I. McNulty, A. G. Peele, and K. A. Nugent, “Ptychographic Fresnel coherent diffractive imaging,” Phys. Rev. A80(6), 063823 (2009). [CrossRef]
Phys. Rev. B
- L. W. Whitehead, G. J. Williams, H. M. Quiney, K. A. Nugent, D. Paterson, M. D. de Jonge, and I. McNulty, “Fresnel diffractive imaging: Experimental study of coherence and curvature,” Phys. Rev. B77(10), 104112 (2008). [CrossRef]
- S. Marchesini, H. He, H. N. Chapman, S. P. Hau-Riege, A. Noy, M. R. Howells, U. Weierstall, and J. C. H. Spence, “X-ray image reconstruction from a diffraction pattern alone,” Phys. Rev. B68(14), 140101 (2003). [CrossRef]
Phys. Rev. Lett.
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- X. Huang, J. Nelson, J. Kirz, E. Lima, S. Marchesini, H. Miao, A. M. Neiman, D. Shapiro, J. Steinbrener, A. Stewart, J. J. Turner, and C. Jacobsen, “Soft X-ray diffraction microscopy of a frozen hydrated yeast cell,” Phys. Rev. Lett.103(19), 198101 (2009). [CrossRef] [PubMed]
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Proc. Natl. Acad. Sci. U.S.A.
- J. Nelson, X. J. Huang, J. Steinbrener, D. Shapiro, J. Kirz, S. Marchesini, A. M. Neiman, J. J. Turner, and C. Jacobsen, “High-resolution x-ray diffraction microscopy of specifically labeled yeast cells,” Proc. Natl. Acad. Sci. U.S.A.107(16), 7235–7239 (2010). [CrossRef] [PubMed]
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- D. Shapiro, P. Thibault, T. Beetz, V. Elser, M. Howells, C. Jacobsen, J. Kirz, E. Lima, H. Miao, A. M. Neiman, and D. Sayre, “Biological imaging by soft x-ray diffraction microscopy,” Proc. Natl. Acad. Sci. U.S.A.102(43), 15343–15346 (2005). [CrossRef] [PubMed]
Proc. R. Soc. London, Ser. A
- D. Gabor, “Microscopy by reconstructed wave-fronts,” Proc. R. Soc. London, Ser. A197(1051), 454–487 (1949). [CrossRef]
Rep. Prog. Phys.
- J. C. H. Spence, U. Weierstall, and H. N. Chapman, “X-ray lasers for structural and dynamic biology,” Rep. Prog. Phys.75(10), 102601 (2012). [CrossRef] [PubMed]
Science
- J. M. Zuo, I. Vartanyants, M. Gao, R. Zhang, and L. A. Nagahara, “Atomic resolution imaging of a carbon nanotube from diffraction intensities,” Science300(5624), 1419–1421 (2003). [CrossRef] [PubMed]
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- P. Thibault, M. Dierolf, A. Menzel, O. Bunk, C. David, and F. Pfeiffer, “High-resolution scanning x-ray diffraction microscopy,” Science321(5887), 379–382 (2008). [CrossRef] [PubMed]
Struct. Chem.
- D. Sayre, “X-ray crystallography: The past and present of the phase problem,” Struct. Chem.13(1), 81–96 (2002). [CrossRef]
Thin Solid Films
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Ultramicroscopy
- U. Weierstall, Q. Chen, J. C. H. Spence, M. R. Howells, M. Isaacson, and R. R. Panepucci, “Image reconstruction from electron and x-ray diffraction patterns using iterative algorithms: experiment and simulation,” Ultramicroscopy90(2-3), 171–195 (2002). [CrossRef] [PubMed]
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Other
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2012, Spence, Rep. Prog. Phys.
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- M. M. Seibert, T. Ekeberg, F. R. N. C. Maia, M. Svenda, J. Andreasson, O. Jönsson, D. Odić, B. Iwan, A. Rocker, D. Westphal, M. Hantke, D. P. DePonte, A. Barty, J. Schulz, L. Gumprecht, N. Coppola, A. Aquila, M. Liang, T. A. White, A. Martin, C. Caleman, S. Stern, C. Abergel, V. Seltzer, J.-M. Claverie, C. Bostedt, J. D. Bozek, S. Boutet, A. A. Miahnahri, M. Messerschmidt, J. Krzywinski, G. Williams, K. O. Hodgson, M. J. Bogan, C. Y. Hampton, R. G. Sierra, D. Starodub, I. Andersson, S. Bajt, M. Barthelmess, J. C. H. Spence, P. Fromme, U. Weierstall, R. Kirian, M. Hunter, R. B. Doak, S. Marchesini, S. P. Hau-Riege, M. Frank, R. L. Shoeman, L. Lomb, S. W. Epp, R. Hartmann, D. Rolles, A. Rudenko, C. Schmidt, L. Foucar, N. Kimmel, P. Holl, B. Rudek, B. Erk, A. Hömke, C. Reich, D. Pietschner, G. Weidenspointner, L. Strüder, G. Hauser, H. Gorke, J. Ullrich, I. Schlichting, S. Herrmann, G. Schaller, F. Schopper, H. Soltau, K.-U. Kühnel, R. Andritschke, C.-D. Schröter, F. Krasniqi, M. Bott, S. Schorb, D. Rupp, M. Adolph, T. Gorkhover, H. Hirsemann, G. Potdevin, H. Graafsma, B. Nilsson, H. N. Chapman, and J. Hajdu, “Single mimivirus particles intercepted and imaged with an x-ray laser,” Nature470(7332), 78–81 (2011). [CrossRef] [PubMed]
- M. Dierolf, A. Menzel, P. Thibault, P. Schneider, C. M. Kewish, R. Wepf, O. Bunk, and F. Pfeiffer, “Ptychographic x-ray computed tomography at the nanoscale,” Nature467(7314), 436–439 (2010). [CrossRef] [PubMed]
- R. R. Nair, P. Blake, J. R. Blake, R. Zan, S. Anissimova, U. Bangert, A. P. Golovanov, S. V. Morozov, A. K. Geim, K. S. Novoselov, and T. Latychevskaia, “Graphene as a transparent conductive support for studying biological molecules by transmission electron microscopy,” Appl. Phys. Lett.97(15), 153102 (2010). [CrossRef]
- G. J. Williams, H. M. Quiney, A. G. Peele, and K. A. Nugent, “Fresnel coherent diffractive imaging: treatment and analysis of data,” New J. Phys.12(3), 035020 (2010). [CrossRef]
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- E. Steinwand, J. N. Longchamp, and H. W. Fink, “Fabrication and characterization of low aberration micrometer-sized electron lenses,” Ultramicroscopy110(9), 1148–1153 (2010). [CrossRef] [PubMed]
- K. S. Raines, S. Salha, R. L. Sandberg, H. D. Jiang, J. A. Rodríguez, B. P. Fahimian, H. C. Kapteyn, J. C. Du, and J. W. Miao, “Three-dimensional structure determination from a single view,” Nature463(7278), 214–217 (2010). [CrossRef] [PubMed]
- T. Latychevskaia, P. Formanek, C. T. Koch, and A. Lubk, “Off-axis and inline electron holography: Experimental comparison,” Ultramicroscopy110(5), 472–482 (2010). [CrossRef]
- X. Huang, J. Nelson, J. Kirz, E. Lima, S. Marchesini, H. Miao, A. M. Neiman, D. Shapiro, J. Steinbrener, A. Stewart, J. J. Turner, and C. Jacobsen, “Soft X-ray diffraction microscopy of a frozen hydrated yeast cell,” Phys. Rev. Lett.103(19), 198101 (2009). [CrossRef] [PubMed]
- Y. Nishino, Y. Takahashi, N. Imamoto, T. Ishikawa, and K. Maeshima, “Three-dimensional visualization of a human chromosome using coherent X-ray diffraction,” Phys. Rev. Lett.102(1), 018101 (2009). [CrossRef] [PubMed]
- D. J. Vine, G. J. Williams, B. Abbey, M. A. Pfeifer, J. N. Clark, M. D. de Jonge, I. McNulty, A. G. Peele, and K. A. Nugent, “Ptychographic Fresnel coherent diffractive imaging,” Phys. Rev. A80(6), 063823 (2009). [CrossRef]
- P. Thibault, M. Dierolf, O. Bunk, A. Menzel, and F. Pfeiffer, “Probe retrieval in ptychographic coherent diffractive imaging,” Ultramicroscopy109(4), 338–343 (2009). [CrossRef] [PubMed]
- A. M. Maiden and J. M. Rodenburg, “An improved ptychographical phase retrieval algorithm for diffractive imaging,” Ultramicroscopy109(10), 1256–1262 (2009). [CrossRef] [PubMed]
- S. Marchesini, S. Boutet, A. E. Sakdinawat, M. J. Bogan, S. Bajt, A. Barty, H. N. Chapman, M. Frank, S. P. Hau-Riege, A. Szoke, C. W. Cui, D. A. Shapiro, M. R. Howells, J. C. H. Spence, J. W. Shaevitz, J. Y. Lee, J. Hajdu, and M. M. Seibert, “Massively parallel x-ray holography,” Nature Photon.2(9), 560–563 (2008). [CrossRef]
- P. Thibault, M. Dierolf, A. Menzel, O. Bunk, C. David, and F. Pfeiffer, “High-resolution scanning x-ray diffraction microscopy,” Science321(5887), 379–382 (2008). [CrossRef] [PubMed]
- L. W. Whitehead, G. J. Williams, H. M. Quiney, K. A. Nugent, D. Paterson, M. D. de Jonge, and I. McNulty, “Fresnel diffractive imaging: Experimental study of coherence and curvature,” Phys. Rev. B77(10), 104112 (2008). [CrossRef]
- C. Y. Song, H. D. Jiang, A. Mancuso, B. Amirbekian, L. Peng, R. Sun, S. S. Shah, Z. H. Zhou, T. Ishikawa, and J. W. Miao, “Quantitative imaging of single, unstained viruses with coherent x-rays,” Phys. Rev. Lett.101(15), 158101 (2008). [CrossRef] [PubMed]
- G. J. Williams, E. Hanssen, A. G. Peele, M. A. Pfeifer, J. Clark, B. Abbey, G. Cadenazzi, M. D. de Jonge, S. Vogt, L. Tilley, and K. A. Nugent, “High-resolution x-ray imaging of plasmodium falciparum-infected red blood cells,” Cytometry, Part A73A(10), 949–957 (2008). [CrossRef] [PubMed]
- G. J. Williams, H. M. Quiney, B. B. Dahl, C. Q. Tran, A. G. Peele, K. A. Nugent, M. D. De Jonge, and D. Paterson, “Curved beam coherent diffractive imaging,” Thin Solid Films515(14), 5553–5556 (2007). [CrossRef]
- T. Latychevskaia and H.-W. Fink, “Solution to the twin image problem in holography,” Phys. Rev. Lett.98(23), 233901 (2007). [CrossRef] [PubMed]
- W. J. Huang, B. Jiang, R. S. Sun, and J. M. Zuo, “Towards sub-atomic resolution electron diffraction imaging of metallic nanoclusters: A simulation study of experimental parameters and reconstruction algorithms,” Ultramicroscopy107(12), 1159–1170 (2007). [CrossRef] [PubMed]
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- J. W. Miao, K. O. Hodgson, T. Ishikawa, C. A. Larabell, M. A. LeGros, and Y. Nishino, “Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction,” Proc. Natl. Acad. Sci. U.S.A.100(1), 110–112 (2003). [CrossRef] [PubMed]
- J. M. Zuo, I. Vartanyants, M. Gao, R. Zhang, and L. A. Nagahara, “Atomic resolution imaging of a carbon nanotube from diffraction intensities,” Science300(5624), 1419–1421 (2003). [CrossRef] [PubMed]
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- R. H. T. Bates, “On phase problems II,” Optik (Stuttg.)51, 223–234 (1978).
- R. H. T. Bates, “On phase problems I,” Optik (Stuttg.)51, 161–170 (1978).
- A. M. J. Huiser, A. J. J. Drenth, and H. A. Ferwerda, “On phase retrieval in electron-microscopy from image and diffraction pattern,” Optik (Stuttg.)45, 303–316 (1976).
- A. M. J. Huiser and H. A. Ferwerda, “On the problem of phase retrieval in electron microscopy from image and diffraction pattern. 2. Uniqueness and stability,” Optik (Stuttg.)46, 407–420 (1976).
- R. W. Gerchberg and W. O. Saxton, “A practical algorithm for determination of phase from image and diffraction plane pictures,” Optik (Stuttg.)35, 237–246 (1972).
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- Data preparation and evaluation techniques for x-ray diffraction microscopy (OE)
- Incorrect support and missing center tolerances of phasing algorithms (OE)
- Novel Fourier-domain constraint for fast phase retrieval in coherent diffraction imaging (OE)
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