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High dynamic range optical projection tomography (HDR-OPT)Peng Fei, Zhilong Yu, Xu Wang, Peter J. Lu, Yusi Fu, Zi He, Jingwei Xiong, and Yanyi Huang »View Author Affiliations
Peng Fei,1,2,6
Zhilong Yu,1,2,6
Xu Wang,3
Peter J. Lu,4
Yusi Fu,1,5
Zi He,1,2
Jingwei Xiong,3
and Yanyi Huang1,2,*
1Biodynamic Optical Imaging Center (BIOPIC), Peking University, Beijing 100871, China 2College of Engineering, Peking University, Beijing 100871, China 3Institute of Molecular Medicine, Peking University, Beijing 100871, China 4Department of Physics and SEAS, Harvard University, Cambridge, Massachusetts 02138, USA 5School of Life Sciences, Peking University, Beijing 100871, China 6These authors contributed equally to this work *Corresponding author: yanyi@pku.edu.cn |
Optics Express, Vol. 20, Issue 8, pp. 8824-8836 (2012)
http://dx.doi.org/10.1364/OE.20.008824
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Abstract
Traditional optical projection tomography (OPT) acquires a single image at each rotation angle, thereby suffering from limitations in CCD dynamic range; this conventional usage cannot resolve features in samples with highly heterogeneous absorption, such as in small animals with organs of varying size. We present a novel technique, applying multiple-exposure high dynamic range (HDR) imaging to OPT, and demonstrate its ability to resolve fine details in zebrafish embryos, without complicated chemical clearing. We implement the tomographic reconstruction algorithm on the GPU, yielding a performance increase of two orders of magnitude. These features give our method potential application in high-throughput, high-resolution in vivo 3D imaging.
© 2012 OSA
OCIS Codes
(170.0110) Medical optics and biotechnology : Imaging systems
(170.0170) Medical optics and biotechnology : Medical optics and biotechnology
(170.3880) Medical optics and biotechnology : Medical and biological imaging
(170.6960) Medical optics and biotechnology : Tomography
ToC Category:
Medical Optics and Biotechnology
History
Original Manuscript: January 5, 2012
Revised Manuscript: March 8, 2012
Manuscript Accepted: March 29, 2012
Published: April 2, 2012
Virtual Issues
Vol. 7, Iss. 6 Virtual Journal for Biomedical Optics
Citation
Peng Fei, Zhilong Yu, Xu Wang, Peter J. Lu, Yusi Fu, Zi He, Jingwei Xiong, and Yanyi Huang, "High dynamic range optical projection tomography (HDR-OPT)," Opt. Express 20, 8824-8836 (2012)
http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-20-8-8824
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References
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- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt.16, 100502 (2011). [CrossRef] [PubMed]
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- Y. Gong, C. H. Mo, and S. E. Fraser, “Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation,” Nature430, 689–693 (2004). [CrossRef] [PubMed]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- A. Momose, T. Takeda, Y. Itai, and K. Hirano, “Phase-contrast x-ray computed tomography for observing biological soft tissues,” Nat. Med.2, 473–475 (1996). [CrossRef] [PubMed]
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- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
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- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- W. A. Kalender, “X-ray computed tomography,” Phys. Med. Biol.51, R29–R43 (2006). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- A. F. Siekmann and N. D. Lawson, “Notch signalling limits angiogenic cell behaviour in developing zebrafish arteries,” Nature445, 781–784 (2007). [CrossRef] [PubMed]
- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- T. Alanentalo, A. Asayesh, H. Morrison, C. E. Lorén, D. Holmberg, J. Sharpe, and U. Ahlgren, “Tomographic molecular imaging and 3D quantification within adult mouse organs,” Nat. Meth.4, 31–33 (2006). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- P. J. Lu, P. A. Sims, H. Oki, J. B. Macarthur, and D. A. Weitz, “Target-locking acquisition with real-time confocal (TARC) microscopy,” Opt. Express15, 8702–8712 (2007). [CrossRef] [PubMed]
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
- A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt.16, 100502 (2011). [CrossRef] [PubMed]
- Y. Gong, C. H. Mo, and S. E. Fraser, “Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation,” Nature430, 689–693 (2004). [CrossRef] [PubMed]
- A. Momose, T. Takeda, Y. Itai, and K. Hirano, “Phase-contrast x-ray computed tomography for observing biological soft tissues,” Nat. Med.2, 473–475 (1996). [CrossRef] [PubMed]
- T. Alanentalo, A. Asayesh, H. Morrison, C. E. Lorén, D. Holmberg, J. Sharpe, and U. Ahlgren, “Tomographic molecular imaging and 3D quantification within adult mouse organs,” Nat. Meth.4, 31–33 (2006). [CrossRef]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- T. Alanentalo, A. Asayesh, H. Morrison, C. E. Lorén, D. Holmberg, J. Sharpe, and U. Ahlgren, “Tomographic molecular imaging and 3D quantification within adult mouse organs,” Nat. Meth.4, 31–33 (2006). [CrossRef]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- A. F. Siekmann and N. D. Lawson, “Notch signalling limits angiogenic cell behaviour in developing zebrafish arteries,” Nature445, 781–784 (2007). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- A. Momose, T. Takeda, Y. Itai, and K. Hirano, “Phase-contrast x-ray computed tomography for observing biological soft tissues,” Nat. Med.2, 473–475 (1996). [CrossRef] [PubMed]
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt.16, 100502 (2011). [CrossRef] [PubMed]
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- C. Vinegoni, L. Fexon, P. F. Feruglio, M. Pivovarov, J. L. Figueiredo, M. Nahrendorf, A. Pozzo, A. Sbarbati, and R. Weissleder, “High throughput transmission optical projection tomography using low cost graphics processing unit,” Opt. Express17, 22320–22332 (2009). [CrossRef]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- P. J. Lu, P. A. Sims, H. Oki, J. B. Macarthur, and D. A. Weitz, “Target-locking acquisition with real-time confocal (TARC) microscopy,” Opt. Express15, 8702–8712 (2007). [CrossRef] [PubMed]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
Biomed. Opt. Express
- J. McGinty, H. B. Taylor, L. Chen, L. Bugeon, J. R. Lamb, M. J. Dallman, and P. M. W. French, “In vivo fluorescence lifetime optical projection tomography,” Biomed. Opt. Express2, 1340–1350 (2011). [CrossRef] [PubMed]
J. Am. Chem. Soc.
- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
J. Biomed. Opt.
- A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt.16, 100502 (2011). [CrossRef] [PubMed]
Nat. Med.
- A. Momose, T. Takeda, Y. Itai, and K. Hirano, “Phase-contrast x-ray computed tomography for observing biological soft tissues,” Nat. Med.2, 473–475 (1996). [CrossRef] [PubMed]
Nat. Meth.
- T. Alanentalo, A. Asayesh, H. Morrison, C. E. Lorén, D. Holmberg, J. Sharpe, and U. Ahlgren, “Tomographic molecular imaging and 3D quantification within adult mouse organs,” Nat. Meth.4, 31–33 (2006). [CrossRef]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
Nat. Methods
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
Nat. Neurosci.
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
Nat. Photonics
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
Nature
- A. F. Siekmann and N. D. Lawson, “Notch signalling limits angiogenic cell behaviour in developing zebrafish arteries,” Nature445, 781–784 (2007). [CrossRef] [PubMed]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- Y. Gong, C. H. Mo, and S. E. Fraser, “Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation,” Nature430, 689–693 (2004). [CrossRef] [PubMed]
Opt. Express
- C. Vinegoni, L. Fexon, P. F. Feruglio, M. Pivovarov, J. L. Figueiredo, M. Nahrendorf, A. Pozzo, A. Sbarbati, and R. Weissleder, “High throughput transmission optical projection tomography using low cost graphics processing unit,” Opt. Express17, 22320–22332 (2009). [CrossRef]
- P. J. Lu, P. A. Sims, H. Oki, J. B. Macarthur, and D. A. Weitz, “Target-locking acquisition with real-time confocal (TARC) microscopy,” Opt. Express15, 8702–8712 (2007). [CrossRef] [PubMed]
Phys. Med. Biol.
- W. A. Kalender, “X-ray computed tomography,” Phys. Med. Biol.51, R29–R43 (2006). [CrossRef] [PubMed]
Plos One
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
Science
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
Other
- R. J. Bryson-Richardson and P. D. Currie, “Optical projection tomography for spatio-temporal analysis in the zebrafish,” in Methods in Cell BiologyM. W. H. William Detrich and I. Z. Leonard, eds. (Academic, 2004), pp. 37–50. [CrossRef] [PubMed]
- E. Reinhard, G. Ward, S. Pattanaik, P. Debevec, G. Ward, and K. Myszkowski, High Dynamic Range Imaging: Acquisition, Display and Image-Based Lighting (Morgan Kaufmann, 2005).
- C. Bloch, The HDRI Handbook: High Dynamic Range Imaging for Photographers and CG Artists (Rocky Nook, 2007).
2011, Rieckher, Plos One
- M. Rieckher, U. J. Birk, H. Meyer, J. Ripoll, and N. Tavernarakis, “Microscopic optical projection tomography in vivo,” Plos One6(4), e18963 (2011). [CrossRef] [PubMed]
- A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, “In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography,” J. Biomed. Opt.16, 100502 (2011). [CrossRef] [PubMed]
- C. Jopling, E. Sleep, M. Raya, M. Marti, A. Raya, and J. C. I. Belmonte, “Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation,” Nature464, 606–609 (2010). [CrossRef] [PubMed]
- D. Razansky, M. Distel, C. Vinegoni, R. Ma, N. Perrimon, R. W. Koster, and V. Ntziachristos, “Multispectral opto-acoustic tomography of deep-seated fluorescent proteins in vivo,” Nat. Photonics3, 412–417 (2009). [CrossRef]
- M. J. Boot, C. H. Westerberg, J. Sanz-Ezquerro, J. Cotterell, R. Schweitzer, M. Torres, and J. Sharpe, “In vitro whole-organ imaging: 4D quantification of growing mouse limb buds,” Nat. Meth.5, 609–612 (2008). [CrossRef]
- C. Vinegoni, C. Pitsouli, D. Razansky, N. Perrimon, and V. Ntziachristos, “In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography,” Nat. Methods5, 45–47 (2008). [CrossRef]
- P. J. Lu, E. Zaccarelli, F. Ciulla, A. B. Schofield, F. Sciortino, and D. A. Weitz, “Gelation of particles with short-range attraction.” Nature453, 499–503 (2008). [CrossRef] [PubMed]
- D. Kim, S. Park, J. H. Lee, Y. Y. Jeong, and S. Jon, “Antibiofouling polymer-coated gold nanoparticles as a contrast agent for in vivo X-ray computed tomography imaging,” J. Am. Chem. Soc.129,7661–7665 (2007). [CrossRef] [PubMed]
- A. F. Siekmann and N. D. Lawson, “Notch signalling limits angiogenic cell behaviour in developing zebrafish arteries,” Nature445, 781–784 (2007). [CrossRef] [PubMed]
- T. Alanentalo, A. Asayesh, H. Morrison, C. E. Lorén, D. Holmberg, J. Sharpe, and U. Ahlgren, “Tomographic molecular imaging and 3D quantification within adult mouse organs,” Nat. Meth.4, 31–33 (2006). [CrossRef]
- B. D. Wilson, M. Ii, K. W. Park, A. Suli, L. K. Sorensen, F. Larrieu-Lahargue, L. D. Urness, W. Suh, J. Asai, G. A. H. Kock, T. Thorne, M. Silver, K. R. Thomas, C. B. Chien, D. W. Losordo, and D. Y. Li, “Netrins promote developmental and therapeutic angiogenesis,” Science313, 640–644 (2006). [CrossRef] [PubMed]
- B. B. Kirby, N. Takada, A. J. Latimer, J. Shin, T. J. Carney, R. N. Kelsh, and B. Appel, “In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development,” Nat. Neurosci.9, 1506–1511 (2006). [CrossRef] [PubMed]
- W. A. Kalender, “X-ray computed tomography,” Phys. Med. Biol.51, R29–R43 (2006). [CrossRef] [PubMed]
- Y. Gong, C. H. Mo, and S. E. Fraser, “Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation,” Nature430, 689–693 (2004). [CrossRef] [PubMed]
- J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sorensen, R. Baldock, and D. Davidson, “Optical projection tomography as a tool for 3D microscopy and gene expression studies,” Science296, 541–545 (2002). [CrossRef] [PubMed]
- A. Momose, T. Takeda, Y. Itai, and K. Hirano, “Phase-contrast x-ray computed tomography for observing biological soft tissues,” Nat. Med.2, 473–475 (1996). [CrossRef] [PubMed]
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