Effect of the coherence properties of self-amplified-spontaneous-emission x-ray free electron lasers on single-particle diffractive imaging
Optics Express, Vol. 16, Issue 4, pp. 2840-2844 (2008)
http://dx.doi.org/10.1364/OE.16.002840
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Abstract
The longitudinal coherence properties of self-amplifiedspontaneous-emission x-ray free electron lasers limit the resolution of single-particle diffraction imaging. We found that for the Linac Coherent Light Source (LCLS) at a wavelength of 1.5 Å the particles have to be smaller than 500 nm in diameter to achieve atomic-resolution imaging with a resolution length of less than 2 Å, suggesting that the longitudinal coherence is sufficient for imaging most biomolecular samples of interest.
© 2008 Optical Society of America
1. Introduction
R. Neutze et al., “Potential for biomolecular imaging with femtosecond X-ray pulses,” Nature 406, 752–757 (2000). [CrossRef] [PubMed]
Y. Derbenev, A. Kondratenko, and E. Saldin, “On the possibility of using a free electron laser for polarization of electrons in storage rings,” Nucl. Instrum. Methods Phys. Res. 193, 415–421 (1982). [CrossRef]
R. Bonifacio, C. Pellegrini, and L. Narducci, “Collective instabilities and high-gain regime in a free electron laser,” Opt. Commun. 50, 373–378 (1984). [CrossRef]
E. Saldin, E. Schneidmiller, and M. Yurkov, “Statistical properties of radiation from VUV and x-ray free electron laser,” Opt. Commun. 148, 383–403 (1998). [CrossRef]
Z. Huang and K.-J. Kim, “Review of x-ray free-electron laser theory,” Phys. Rev. ST Accel. Beams 10, 034801 (2007). [CrossRef]
J. Miao et al., “Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens,” Nature 400, 342–344 (1999). [CrossRef]
V. Ayvazyan et al., “First operation of a free-electron laser generating GWpower radiation at 32 nm wavelength,” Eur. Phys. J. D 37, 297–303 (2006). [CrossRef]
H. N. Chapman et al., “Femtosecond diffractive imaging with a soft-X-ray free-electron laser,” Nature Phys. 2, 839–843 (2006). [CrossRef]
S. P. Hau-Riege et al., “Pulse requirements for x-ray diffraction imaging of single biological molecules,” Phys. Rev. E 71, 0619191 (2005). [CrossRef]
A. Szoke, “Diffraction of partially coherent x-rays and the crystallographic phase problem,” Acta Cryst. A 57, 586–603 (2001). [CrossRef]
2. Diffraction model
Y. Li, et al., “Characterization of a chaotic optical field using a high-gain, self-amplified free electron laser,” Phys. Rev. Lett. 91, 243602 (2003). [CrossRef] [PubMed]
3. Effect of coherence on diffraction
H. M. Berman et al., “The Protein Data Bank,” Nucl. Acids Res. 28, 235–242 (2000). [CrossRef]
R. Neutze et al., “Potential for biomolecular imaging with femtosecond X-ray pulses,” Nature 406, 752–757 (2000). [CrossRef] [PubMed]
S. P. Hau-Riege et al., “Pulse requirements for x-ray diffraction imaging of single biological molecules,” Phys. Rev. E 71, 0619191 (2005). [CrossRef]
J. C. H. Spence, et al., “Diffraction and imaging from a beam of laser-aligned proteins: resolution limits,” Acta Cryst. A A61, 237–245 (2005). [CrossRef]
4. Conclusions
Acknowledgments
References and links
R. Neutze et al., “Potential for biomolecular imaging with femtosecond X-ray pulses,” Nature 406, 752–757 (2000). [CrossRef] [PubMed] | |
A. Kondratenko and E. Saldin, “Generation of coherent radiation by a relativistic electron beam in an ondulator,” Part. Accel. 10, 207–216 (1980). | |
Y. Derbenev, A. Kondratenko, and E. Saldin, “On the possibility of using a free electron laser for polarization of electrons in storage rings,” Nucl. Instrum. Methods Phys. Res. 193, 415–421 (1982). [CrossRef] | |
R. Bonifacio, C. Pellegrini, and L. Narducci, “Collective instabilities and high-gain regime in a free electron laser,” Opt. Commun. 50, 373–378 (1984). [CrossRef] | |
Linac Coherent Light Source (LCLS) Design Study Report, SLAC-R-521, 1998, available from the National Technical Information Services, 5285 Port Royal Road, Springfield, Virginia, 22161 . | |
E. Saldin, E. Schneidmiller, and M. Yurkov, “Statistical properties of radiation from VUV and x-ray free electron laser,” Opt. Commun. 148, 383–403 (1998). [CrossRef] | |
Z. Huang and K.-J. Kim, “Review of x-ray free-electron laser theory,” Phys. Rev. ST Accel. Beams 10, 034801 (2007). [CrossRef] | |
J. Miao et al., “Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens,” Nature 400, 342–344 (1999). [CrossRef] | |
V. Ayvazyan et al., “First operation of a free-electron laser generating GWpower radiation at 32 nm wavelength,” Eur. Phys. J. D 37, 297–303 (2006). [CrossRef] | |
H. N. Chapman et al., “Femtosecond diffractive imaging with a soft-X-ray free-electron laser,” Nature Phys. 2, 839–843 (2006). [CrossRef] | |
S. P. Hau-Riege et al., “Pulse requirements for x-ray diffraction imaging of single biological molecules,” Phys. Rev. E 71, 0619191 (2005). [CrossRef] | |
A. Szoke, “Diffraction of partially coherent x-rays and the crystallographic phase problem,” Acta Cryst. A 57, 586–603 (2001). [CrossRef] | |
Y. Li, et al., “Characterization of a chaotic optical field using a high-gain, self-amplified free electron laser,” Phys. Rev. Lett. 91, 243602 (2003). [CrossRef] [PubMed] | |
H. M. Berman et al., “The Protein Data Bank,” Nucl. Acids Res. 28, 235–242 (2000). [CrossRef] | |
J. C. H. Spence, et al., “Diffraction and imaging from a beam of laser-aligned proteins: resolution limits,” Acta Cryst. A A61, 237–245 (2005). [CrossRef] |
OCIS Codes
(110.4980) Imaging systems : Partial coherence in imaging
(110.7440) Imaging systems : X-ray imaging
ToC Category:
Imaging Systems
History
Original Manuscript: December 20, 2007
Revised Manuscript: February 1, 2008
Manuscript Accepted: February 13, 2008
Published: February 14, 2008
Virtual Issues
Vol. 3, Iss. 3 Virtual Journal for Biomedical Optics
Citation
Stefan P. Hau-Riege, "Effect of the coherence properties of self-amplified-spontaneous-emission
x-ray free electron lasers on single-particle diffractive imaging," Opt. Express 16, 2840-2844 (2008)
http://www.opticsinfobase.org/oe/abstract.cfm?URI=oe-16-4-2840
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References
- R. Neutze, et al., "Potential for biomolecular imaging with femtosecond X-ray pulses," Nature 406, 752-757 (2000). [CrossRef] [PubMed]
- A. Kondratenko and E. Saldin, "Generation of coherent radiation by a relativistic electron beam in an ondulator," Part. Accel. 10, 207-216 (1980).
- Y. Derbenev, A. Kondratenko, and E. Saldin, "On the possibility of using a free electron laser for polarization of electrons in storage rings," Nucl. Instrum. Methods Phys. Res. 193, 415-421 (1982). [CrossRef]
- R. Bonifacio, C. Pellegrini, and L. Narducci, "Collective instabilities and high-gain regime in a free electron laser," Opt. Commun. 50, 373-378 (1984). [CrossRef]
- Linac Coherent Light Source (LCLS) Design Study Report, SLAC-R-521, 1998, available from the National Technical Information Services, 5285 Port Royal Road, Springfield, Virginia, 22161.
- E. Saldin, E. Schneidmiller, and M. Yurkov, "Statistical properties of radiation from VUV and x-ray free electron laser," Opt. Commun. 148, 383-403 (1998). [CrossRef]
- Z. Huang and K.-J. Kim, "Review of x-ray free-electron laser theory," Phys. Rev. ST Accel. Beams 10, 034801 (2007). [CrossRef]
- Z. Huang, private communication.
- J. Miao, et al., "Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens," Nature 400, 342-344 (1999). [CrossRef]
- V. Ayvazyan, et al., "First operation of a free-electron laser generating GWpower radiation at 32 nm wavelength," Eur. Phys. J. D 37, 297-303 (2006). [CrossRef]
- H. N. Chapman, et al., "Femtosecond diffractive imaging with a soft-X-ray free-electron laser," Nat. Physics 2, 839-843 (2006). [CrossRef]
- S. P. Hau-Riege, et al., " Pulse requirements for x-ray diffraction imaging of single biological molecules," Phys. Rev. E 71, 0619191 (2005). [CrossRef]
- A. Szoke, "Diffraction of partially coherent x-rays and the crystallographic phase problem," Acta Cryst. A 57, 586-603 (2001). [CrossRef]
- Y. Li, et al., "Characterization of a chaotic optical field using a high-gain, self-amplified free electron laser," Phys. Rev. Lett. 91, 243602 (2003). [CrossRef] [PubMed]
- H. M. Berman, et al., "The Protein Data Bank," Nucl. Acids Res. 28, 235-242 (2000). [CrossRef]
- J. C. H. Spence, et al., "Diffraction and imaging from a beam of laser-aligned proteins: resolution limits," Acta Cryst. A A61, 237-245 (2005). [CrossRef]
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