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Virtual Journal for Biomedical Optics

Virtual Journal for Biomedical Optics

| EXPLORING THE INTERFACE OF LIGHT AND BIOMEDICINE

  • Editor: Gregory W. Faris
  • Vol. 4, Iss. 5 — May. 5, 2009

Retinal tumor imaging and volume quantification in mouse model using spectraldomain optical coherence tomography

Marco Ruggeri, Gavriil Tsechpenakis, Shuliang Jiao, Maria Elena Jockovich, Colleen Cebulla, Eleut Hernandez, Timothy G. Murray, and Carmen A. Puliafito  »View Author Affiliations


Optics Express, Vol. 17, Issue 5, pp. 4074-4083 (2009)
http://dx.doi.org/10.1364/OE.17.004074


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Abstract

We have successfully imaged the retinal tumor in a mouse model using an ultra-high resolution spectral-domain optical coherence tomography (SD-OCT) designed for small animal retinal imaging. For segmentation of the tumor boundaries and calculation of the tumor volume, we developed a novel segmentation algorithm. The algorithm is based on parametric deformable models (active contours) and is driven by machine learning-based region classification, namely a Conditional Random Field. With this algorithm we are able to obtain the tumor boundaries automatically, while the user can specify additional constraints (points on the boundary) to correct the segmentation result, if needed. The system and algorithm were successfully applied to studies on retinal tumor progression and monitoring treatment effects quantitatively in a mouse model of retinoblastoma.

© 2009 Optical Society of America

OCIS Codes
(100.2960) Image processing : Image analysis
(170.3880) Medical optics and biotechnology : Medical and biological imaging
(170.4500) Medical optics and biotechnology : Optical coherence tomography
(170.4580) Medical optics and biotechnology : Optical diagnostics for medicine

ToC Category:
OCT in Retinal Disease

History
Original Manuscript: October 30, 2008
Revised Manuscript: January 26, 2009
Manuscript Accepted: February 21, 2009
Published: March 2, 2009

Virtual Issues
Vol. 4, Iss. 5 Virtual Journal for Biomedical Optics
Interactive Science Publishing Focus Issue: Optical Coherence Tomography (OCT) (2009) Optics Express

Citation
Marco Ruggeri, Gavriil Tsechpenakis, Shuliang Jiao, Maria Elena Jockovich, Colleen Cebulla, Eleut Hernandez, Timothy G. Murray, and Carmen A. Puliafito, "Retinal tumor imaging and volume quantification in mouse model using spectral-domain optical coherence tomography," Opt. Express 17, 4074-4083 (2009)
http://www.opticsinfobase.org/vjbo/abstract.cfm?URI=oe-17-5-4074


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