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Virtual Journal for Biomedical Optics

Virtual Journal for Biomedical Optics

| EXPLORING THE INTERFACE OF LIGHT AND BIOMEDICINE

  • Editors: Andrew Dunn and Anthony Durkin
  • Vol. 6, Iss. 1 — Jan. 3, 2011

Graphics processing unit accelerated non-uniform fast Fourier transform for ultrahigh-speed, real-time Fourier-domain OCT

Kang Zhang and Jin U. Kang  »View Author Affiliations


Optics Express, Vol. 18, Issue 22, pp. 23472-23487 (2010)
http://dx.doi.org/10.1364/OE.18.023472


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Abstract

We implemented fast Gaussian gridding (FGG)-based non-uniform fast Fourier transform (NUFFT) on the graphics processing unit (GPU) architecture for ultrahigh-speed, real-time Fourier-domain optical coherence tomography (FD-OCT). The Vandermonde matrix-based non-uniform discrete Fourier transform (NUDFT) as well as the linear/cubic interpolation with fast Fourier transform (InFFT) methods are also implemented on GPU to compare their performance in terms of image quality and processing speed. The GPU accelerated InFFT/NUDFT/NUFFT methods are applied to process both the standard half-range FD-OCT and complex full-range FD-OCT (C-FD-OCT). GPU-NUFFT provides an accurate approximation to GPU-NUDFT in terms of image quality, but offers >10 times higher processing speed. Compared with the GPU-InFFT methods, GPU-NUFFT has improved sensitivity roll-off, higher local signal-to-noise ratio and immunity to side-lobe artifacts caused by the interpolation error. Using a high speed CMOS line-scan camera, we demonstrated the real-time processing and display of GPU-NUFFT-based C-FD-OCT at a camera-limited rate of 122 k line/s (1024 pixel/A-scan).

© 2010 OSA

OCIS Codes
(100.2000) Image processing : Digital image processing
(110.4500) Imaging systems : Optical coherence tomography
(170.3890) Medical optics and biotechnology : Medical optics instrumentation

ToC Category:
Image Processing

History
Original Manuscript: September 17, 2010
Revised Manuscript: October 14, 2010
Manuscript Accepted: October 15, 2010
Published: October 22, 2010

Virtual Issues
Vol. 6, Iss. 1 Virtual Journal for Biomedical Optics

Citation
Kang Zhang and Jin U. Kang, "Graphics processing unit accelerated non-uniform fast Fourier transform for ultrahigh-speed, real-time Fourier-domain OCT," Opt. Express 18, 23472-23487 (2010)
http://www.opticsinfobase.org/vjbo/abstract.cfm?URI=oe-18-22-23472


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