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Virtual Journal for Biomedical Optics

Virtual Journal for Biomedical Optics

| EXPLORING THE INTERFACE OF LIGHT AND BIOMEDICINE

  • Editor: Gregory W. Faris
  • Vol. 2, Iss. 7 — Jul. 16, 2007

Multi-view image fusion improves resolution in three-dimensional microscopy

Jim Swoger, Peter Verveer, Klaus Greger, Jan Huisken, and Ernst H.K. Stelzer  »View Author Affiliations


Optics Express, Vol. 15, Issue 13, pp. 8029-8042 (2007)
http://dx.doi.org/10.1364/OE.15.008029


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Abstract

A non-blind, shift-invariant image processing technique that fuses multi-view three-dimensional image data sets into a single, high quality three-dimensional image is presented. It is effective for 1) improving the resolution and isotropy in images of transparent specimens, and 2) improving the uniformity of the image quality of partially opaque samples. This is demonstrated with fluorescent samples such as Drosophila melanogaster and Medaka embryos and pollen grains imaged by Selective Plane Illumination Microscopy (SPIM). The application of the algorithm to SPIM data yields high-resolution images of organ structure and gene expression, in some cases at a sub-cellular level, throughout specimens ranging from several microns up to a millimeter in size.

© 2007 Optical Society of America

OCIS Codes
(100.0100) Image processing : Image processing
(100.3010) Image processing : Image reconstruction techniques
(100.6890) Image processing : Three-dimensional image processing
(180.0180) Microscopy : Microscopy
(180.6900) Microscopy : Three-dimensional microscopy

ToC Category:
Image Processing

History
Original Manuscript: March 26, 2007
Revised Manuscript: May 23, 2007
Manuscript Accepted: May 23, 2007
Published: June 13, 2007

Virtual Issues
Vol. 2, Iss. 7 Virtual Journal for Biomedical Optics

Citation
Jim Swoger, Peter Verveer, Klaus Greger, Jan Huisken, and Ernst H. K. Stelzer, "Multi-view image fusion improves resolution in three-dimensional microscopy," Opt. Express 15, 8029-8042 (2007)
http://www.opticsinfobase.org/vjbo/abstract.cfm?URI=oe-15-13-8029


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