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Virtual Journal for Biomedical Optics

Virtual Journal for Biomedical Optics

| EXPLORING THE INTERFACE OF LIGHT AND BIOMEDICINE

  • Editors: Andrew Dunn and Anthony Durkin
  • Vol. 8, Iss. 6 — Jun. 27, 2013

Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns

Agnieszka Suchwalko, Igor Buzalewicz, Alina Wieliczko, and Halina Podbielska  »View Author Affiliations


Optics Express, Vol. 21, Issue 9, pp. 11322-11337 (2013)
http://dx.doi.org/10.1364/OE.21.011322


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Abstract

It was demonstrated that statistical analysis of bacteria colonies Fresnel patterns recorded in the optical system with converging spherical wave illumination is suitable for highly effective bacteria species classification. The proposed method includes Fresnel patterns recording followed by image processing and the statistical analysis based on feature extraction, feature selection, classification and classification performance methods. Examination performed on various bacteria species (Salmonella enteritidis, Staphylococcus aureus, Staphylococcus intermedius, Escherichia coli, Proteus mirabilis, Pseudomonas aeruginosa and Citrobacter freundii) revealed that the proposed method achieved very high accuracy of over 98%.

© 2013 OSA

OCIS Codes
(110.2960) Imaging systems : Image analysis
(120.4630) Instrumentation, measurement, and metrology : Optical inspection
(170.0110) Medical optics and biotechnology : Imaging systems
(170.0170) Medical optics and biotechnology : Medical optics and biotechnology
(170.4580) Medical optics and biotechnology : Optical diagnostics for medicine
(290.2558) Scattering : Forward scattering

ToC Category:
Medical Optics and Biotechnology

History
Original Manuscript: March 7, 2013
Revised Manuscript: April 16, 2013
Manuscript Accepted: April 16, 2013
Published: May 1, 2013

Virtual Issues
Vol. 8, Iss. 6 Virtual Journal for Biomedical Optics

Citation
Agnieszka Suchwalko, Igor Buzalewicz, Alina Wieliczko, and Halina Podbielska, "Bacteria species identification by the statistical analysis of bacterial colonies Fresnel patterns," Opt. Express 21, 11322-11337 (2013)
http://www.opticsinfobase.org/vjbo/abstract.cfm?URI=oe-21-9-11322


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