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Virtual Journal for Biomedical Optics

| EXPLORING THE INTERFACE OF LIGHT AND BIOMEDICINE

  • Editor: Gregory W. Faris
  • Vol. 2, Iss. 7 — Jul. 16, 2007
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Fully automated beam-alignment and single stroke guided manual alignment of counter-propagating multi-beam based optical micromanipulation systems

Jeppe Seidelin Dam, Peter John Rodrigo, Ivan R. Perch-Nielsen, and Jesper Glückstad  »View Author Affiliations


Optics Express, Vol. 15, Issue 13, pp. 7968-7973 (2007)
http://dx.doi.org/10.1364/OE.15.007968


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Abstract

In a previous paper [J. S. Dam et al, Opt. Express 15, 1923 (2007)] we demonstrated computerized “drag-and-drop” optical alignment of a counter-propagating multi-beam based micromanipulation system. By inclusion of image analysis, we report here on the extension of this work to accommodate a completely automated beam-alignment process. Additionally, to maintain a cost-effective and technically less demanding system architecture, we also report on a computer-guided manual alignment procedure. In the manual version, the computer analyzes the initial misalignment and the required compensations for each mirror in the system are calculated. Subsequently, the user is guided in adjusting the mirrors exactly by the requisite amount. This way, all mirrors only need to be moved once. The image analysis utilized in both calibration schemes employs a fitting algorithm to determine the position of beam-center with sub-pixel accuracy, thereby providing “better than human” alignment.

© 2007 Optical Society of America

1. Introduction

As put forward by Kraikivski et al [1

1. P. Kraikivski, B. Pouligny, and R. Dimova, “Implementing both short- and long-working-distance optical trappings into a commercial microscope,” Rev. Sci. Instrum. 77, 113703 (2006). [CrossRef]

], alignment of various counter-propagating beam trapping systems [2–5

2. S. A. Tatarkova, A. E. Carruthers, and K. Dholakia, “One-Dimensional Optically Bound Arrays of Microscopic Particles,” Phys. Rev. Lett 89, 283901 (2002). [CrossRef]

] has been considered problematic. The challenge in having an array of such traps is that the individual beams must be aligned to a high precision. A recent paper shows optical manipulation using four intersecting laser beams [6

6. J. Huisken, J. Swoger, and E. H. Stelzer, “Three-dimensional optical manipulation using four collimated intersecting laser beams,” Opt. Express 15, 4921–4928 (2007). [CrossRef] [PubMed]

]. Such a system will face calibration issues similar to the ones presented here, and the methods we describe here may be applicable in some modified form.

The fully automated alignment requires an auto-focusing algorithm and image analysis to determine the positions of the beam-centers. One method is to rely on the (2-D) ray transfer matrix analysis (like the “drag-and-drop” calibration routine [7

7. J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, “Computerized “drag-and-drop” alignment of GPC-based optical micromanipulation system,” Opt. Express 15, 1923–1931 (2007). [CrossRef] [PubMed]

]) and perform a few iterations to eliminate residual errors. We will explain the single-stroke manual alignment by a simple 4-D vector-analysis, and demonstrate a method that swiftly produces high accuracy calibration.

2. Fully automated alignment including auto-focusing algorithm

Having a completely automated calibration routine opens for automated measurements on a plurality of samples. Combining an automatic sample exchange mechanism as an extension of what we have described in Ref. [7

7. J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, “Computerized “drag-and-drop” alignment of GPC-based optical micromanipulation system,” Opt. Express 15, 1923–1931 (2007). [CrossRef] [PubMed]

] with vision-based automated experiments [8

8. I. R. Perch-Nielsen, P. J. Rodrigo, C. A. Alonzo, and J. Glückstad, “Autonomous and 3D real-time multi-beam manipulation in a microfluidic environment,” Opt. Express 14, 12199–12205 (2006). [CrossRef] [PubMed]

], would allow us to examine a large amount of samples, without user involvement.

The first step in the calibration scheme as described in Ref. [7

7. J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, “Computerized “drag-and-drop” alignment of GPC-based optical micromanipulation system,” Opt. Express 15, 1923–1931 (2007). [CrossRef] [PubMed]

] is to position the upper surface of the sample chamber to the focal plane of the upper objective lens. For the computer to determine when this has been achieved, a function that gives a measure of focus quality is needed. A simple method proving to be sufficient for this purpose is determining the standard deviation of the pixel intensities in the image. A defocused image is blurred out over more pixels and thus results in a lower standard deviation. However, since we are using a coherent light source, we must carefully choose a light-pattern that does not produce Fresnel propagated self-images or self-image-like patterns, i.e. Talbot images [9

9. E. Hecht, Optics (Addison-Wesley, 2002).

], which might fool the algorithm. We have found that a random mesh of curved, thin lines is a good choice, since it fades away efficiently when defocused as shown in Fig. 1.

Fig. 1. Displaying a binary pattern consisting of randomly distributed curved lines using a spatial light modulator (SLM) produces the same pattern in the focus plane at the sample as described in Ref. 7 and references therein. When the sample surface is aligned with this focused image, a focused image will be visualized on the CCD camera (a). If the sample surface is displaced from the focal plane, the image is blurred (b).

By monitoring standard deviation of pixel-intensities as a focus quality parameter while moving the sample stage through focus, we can determine the optimal stage z-position for a focused image. For time-efficiency the process is divided in two steps: (1) a quick sweep of a large region to determine the approximate location of focus, (2) a slower, smaller sweep to determine a more accurate position of focus. In Fig. 2 we show the focus quality as function of axial coordinate of the sample.

Fig. 2. Focus quality or standard deviation of pixel-intensities as function of motorized stage position. Data shown are from the quick (1) and slow (2) sweep, respectively. The position with largest pixel standard deviation in the slow sweep is the measured focus position.

Fig. 3. To the left are frames showing focused and defocused crosshairs. Their locations are determined with sub-pixel accuracy by quadratic fitting of summed line intensities as shown to the right.

For the defocused crosshair, we choose a pattern on the spatial light modulator which produces a suitable Fresnel propagated pattern, which is easy to analyze. The accuracy obtained by image analysis is better than what is achieved by human eye. Except for the image analysis replacing the “drag-and-drop” GUI tasks, the procedure works on exactly the same principle as described previously [7

7. J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, “Computerized “drag-and-drop” alignment of GPC-based optical micromanipulation system,” Opt. Express 15, 1923–1931 (2007). [CrossRef] [PubMed]

]. The resulting fully automated calibration routine makes calibration much faster and allows sub-pixel accuracy through image analysis.

3. Computer-guided manual alignment

The fully automated alignment, as good as it is, comes with a steep price tag, as we need 8 high precision actuators to adjust the mirrors. To make a less expensive, but still easy-to-use calibration, we have designed a system, where the computer calculates how much each mirror must be adjusted, draws a target crosshair on the monitor, and then asks the user to do the actual adjustment of one mirror until the crosshairs overlap. Fundamentally, this method differs in the sense that it is optimized to require as little user interaction as possible, and since the mirrors are no longer computerized, we cannot rely on the separation of tilt and image position (that requires moving two mirrors simultaneously) as in the previously described methods. To this end, we have devised a method that only requires adjusting each mirror once.

Fig. 4. 3D-drawing showing that adjusting a mirror does not only result in an angle being induced (here Δθ), but also some beam translation (here Δs) will occur, which may or may not be on the same axis.

In this analysis the system is considered linear, which is a reasonable approximation for the small angles we are working with. In extreme cases (e.g. accidental large displacement of a knob), a slight tilt may remain after calibration (due to non-linearity), which can easily be removed by a second iteration of the calibration procedure.

Fig. 5. Similar to the previously described experimental setup [7], both the upper and lower beam paths have two adjustable mirror mounts. Each mirror can be adjusted around two axes.

Before the alignment can take place, the computer must know the effect of moving the individual mirror adjustment knobs (knob A and B on the adjustable mirror furthest from the sample, and knob C and D on the mirror closest to the sample). The computer learns this information once and for all, by subtracting the image coordinates of focused (x,y) and defocused (u,v) crosshairs before and after arbitrary adjustment of a single knob [Eq. (1)].This information, which can be thought of as directional vectors, must be obtained for all knobs. Consequently a GUI interface automatically changing between focused and defocused crosshair positions and performing image analysis et cetera has been developed.

ΔxAΔyAΔuAΔvA=xAdisplacedyAdisplaceduAdisplacedvAdisplacedxinitialyinitialuinitialvinitial
(1)

Knowing the effect of adjusting each of the four available knobs, and the error in alignment we need to correct (gained from image analysis), allow us to calculate how much each knob must be displaced in the manual alignment (or rather, the crosshair displacements to be obtained from each knob). Determining these quantities requires solving a 4-D linear equation [Eq. (2)]. The right hand side of Eq. (2) is the required displacement of focused and defocused crosshairs to have the beam aligned.

aΔxAΔyAΔuAΔvA+bΔxBΔyBΔuBΔvB+cΔxCΔyCΔuCΔvC+dΔxDΔyDΔuDΔvD=ΔxΔyΔuΔv
(2)

Knob A and knob B (on the mirror furthest from the sample) must be displaced the amounts a and b respectively. This will result in the defocused image being displaced by an amount calculated in Eq. (3).

Δu˜Δv˜=aΔuAΔvA+bΔuBΔvB=ΔuΔvcΔucΔvcdΔucΔvc
(3)

To guide the user to this exact displacement (calculated from the starting position of the defocused crosshair), a target crosshair is displayed at this location on the monitor. The user must then adjust knob A and knob B until the crosshairs overlap.

Lastly, the second mirror must be displaced. First, the sample is moved to focus, and a green crosshair is displayed at the center of the screen, to which the user must adjust knob C and knob D until the crosshairs overlap. This will result in the desired beam alignment. The entire procedure must be repeated with the beam coming from below (with the only difference of moving the lower objective rather than the sample to adjust focus). The single solution to Eq. (2) furthermore ensures stability against successive alignments, as the final position of the knobs is independent of the initial misalignment.

The visual result of this procedure can be observed in Fig. 6 and in the online video.

Fig. 6. (AVI: 2.4 MB) Figure showing initial focused and defocused crosshairs positions (a+b). A target crosshair is displayed in the defocused image (c). The user adjusts the first mirror until crosshairs overlap (d). Move to focus, and display centered crosshair for user to displace second mirror (e+f). Finally the image is defocused to proof correct calibration (g). [Media 1]

The computer-guided manual alignment allows an unskilled user to calibrate the system much faster than an experienced user without computer-guidance.

4. Conclusion

We have shown how image analysis can be used to fully automate calibration of a motorized counter-propagating multi-beam based optical micromanipulation system. The same image analysis has been implemented in a setup without motorized mirrors resulting in a computer-guided manual alignment, where all mirrors only need to be adjusted once by the user. For the guided alignment, we do need absolute control over focus, so the sample z-stage and lower objective must be motorized. The guided manual alignment of the upper and lower beam sets can be completed in about 2 minutes.

Acknowledgments

We would like to thank the support from the EU-FP6-NEST program (ATOM3D), the ESF-Eurocores-SONS program (SPANAS) and the Danish Technical Scientific Research Council (FTP).

References and links

1.

P. Kraikivski, B. Pouligny, and R. Dimova, “Implementing both short- and long-working-distance optical trappings into a commercial microscope,” Rev. Sci. Instrum. 77, 113703 (2006). [CrossRef]

2.

S. A. Tatarkova, A. E. Carruthers, and K. Dholakia, “One-Dimensional Optically Bound Arrays of Microscopic Particles,” Phys. Rev. Lett 89, 283901 (2002). [CrossRef]

3.

Z. Wang, J. Yin, and Z. Wang, “Guiding and cooling of atoms in an interference field composed of two hollow beams,” Opt. Express 14, 9551–9557 (2006). [CrossRef] [PubMed]

4.

A. Isomura, N. Magome, M. I. Kohira, and K. Yoshikawa, “Toward the stable optical trapping of a droplet with counter laser beams under microgravity,” Chem. Phys. Lett. 429, 321–325 (2006). [CrossRef]

5.

P. J. Rodrigo, V. R. Daria, and J. Glückstad, “Four-dimensional optical manipulation of colloidal particles,” Appl. Phys. Lett. 86, 074103 (2005). [CrossRef]

6.

J. Huisken, J. Swoger, and E. H. Stelzer, “Three-dimensional optical manipulation using four collimated intersecting laser beams,” Opt. Express 15, 4921–4928 (2007). [CrossRef] [PubMed]

7.

J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, “Computerized “drag-and-drop” alignment of GPC-based optical micromanipulation system,” Opt. Express 15, 1923–1931 (2007). [CrossRef] [PubMed]

8.

I. R. Perch-Nielsen, P. J. Rodrigo, C. A. Alonzo, and J. Glückstad, “Autonomous and 3D real-time multi-beam manipulation in a microfluidic environment,” Opt. Express 14, 12199–12205 (2006). [CrossRef] [PubMed]

9.

E. Hecht, Optics (Addison-Wesley, 2002).

OCIS Codes
(100.2960) Image processing : Image analysis
(170.4520) Medical optics and biotechnology : Optical confinement and manipulation
(220.1140) Optical design and fabrication : Alignment

ToC Category:
Trapping

History
Original Manuscript: May 3, 2007
Revised Manuscript: June 6, 2007
Manuscript Accepted: June 7, 2007
Published: June 11, 2007

Virtual Issues
Vol. 2, Iss. 7 Virtual Journal for Biomedical Optics

Citation
Jeppe Seidelin Dam, Peter John Rodrigo, Ivan R. Perch-Nielsen, and Jesper Glückstad, "Fully automated beam-alignment and single stroke guided manual alignment of counter-propagating multi-beam based optical micromanipulation systems," Opt. Express 15, 7968-7973 (2007)
http://www.opticsinfobase.org/vjbo/abstract.cfm?URI=oe-15-13-7968


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References

  1. P. Kraikivski, B. Pouligny, and R. Dimova, "Implementing both short- and long-working-distance optical trappings into a commercial microscope," Rev. Sci. Instrum. 77, 113703 (2006). [CrossRef]
  2. S. A. Tatarkova, A. E. Carruthers, and K. Dholakia, "One-Dimensional Optically Bound Arrays of Microscopic Particles," Phys. Rev. Lett 89, 283901 (2002). [CrossRef]
  3. Z. Wang, J. Yin, and Z. Wang, "Guiding and cooling of atoms in an interference field composed of two hollow beams," Opt. Express 14, 9551-9557 (2006). [CrossRef] [PubMed]
  4. A. Isomura, N. Magome, M. I. Kohira, K. Yoshikawa, "Toward the stable optical trapping of a droplet with counter laser beams under microgravity," Chem. Phys. Lett. 429, 321-325 (2006). [CrossRef]
  5. P. J. Rodrigo, V. R. Daria, and J. Glückstad, "Four-dimensional optical manipulation of colloidal particles," Appl. Phys. Lett. 86, 074103 (2005). [CrossRef]
  6. J. Huisken, J. Swoger, and E. H. Stelzer, "Three-dimensional optical manipulation using four collimated intersecting laser beams," Opt. Express 15, 4921-4928 (2007). [CrossRef] [PubMed]
  7. J. S. Dam, P. J. Rodrigo, I. R. Perch-Nielsen, C. A. Alonzo, and J. Glückstad, "Computerized "drag-and-drop" alignment of GPC-based optical micromanipulation system," Opt. Express 15, 1923-1931 (2007). [CrossRef] [PubMed]
  8. I. R. Perch-Nielsen, P. J. Rodrigo, C. A. Alonzo, and J. Glückstad, "Autonomous and 3D real-time multi-beam manipulation in a microfluidic environment," Opt. Express 14, 12199-12205 (2006). [CrossRef] [PubMed]
  9. E. Hecht, Optics (Addison-Wesley, 2002).

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